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RTP_11222018_0_1um_scaffold_1043

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1043_1
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..1721)
DNA (1719bp) protein (573aa)
aspartyl-tRNA synthetase n=1 Tax=Methylotenera RepID=UPI000371FAF7
aspS; aspartyl-tRNA synthetase
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ACT51689.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_11222018_0_1um_scaffold_1043_2
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1732..2343)
DNA (612bp) protein (204aa)
Transmembrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIY6_9PROT
Membrane protein {ECO:0000313|EMBL:GAO35814.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
transmembrane protein
RTP_11222018_0_1um_scaffold_1043_3
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2357..2626)
DNA (270bp) protein (90aa)
FmdB family transcriptional regulator n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PXB8_9BURK
FmdB family transcriptional regulator
Regulatory protein, FmdB family {ECO:0000313|EMBL:EZP48275.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
RTP_11222018_0_1um_scaffold_1043_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2703..4664)
DNA (1962bp) protein (654aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003692EE7
site-specific recombinase Gcr
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1043_5
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4801..5256
DNA (456bp) protein (152aa)
Cytochrome c, class II n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YG5_RHOFD
class II cytochrome c
Cytochrome c, class II {ECO:0000313|EMBL:ABD69188.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
RTP_11222018_0_1um_scaffold_1043_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5447..6556)
DNA (1110bp) protein (370aa)
hemH; ferrochelatase (EC:4.99.1.1)
ferrochelatase n=1 Tax=Thiobacillus thioparus RepID=UPI0003617E6C
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1043_7
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6561..7580)
DNA (1020bp) protein (340aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJP5_9PROT
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_1043_8
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7644..8516
DNA (873bp) protein (291aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
NAD kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9V1_9PROT
RTP_11222018_0_1um_scaffold_1043_9

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8516..10171
DNA (1656bp) protein (552aa)
DNA repair protein RecN (Recombination protein N) n=1 Tax=mine drainage metagenome RepID=E6QUI2_9ZZZZ
DNA repair protein RecN (Recombination protein N) {ECO:0000313|EMBL:CBI10905.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DNA repair protein RecN
RTP_11222018_0_1um_scaffold_1043_10
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10238..10774)
DNA (537bp) protein (179aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X8K7_METSD
N-acetyl-anhydromuranmyl-L-alanine amidase
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD {ECO:0000313|EMBL:ACT49477.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
RTP_11222018_0_1um_scaffold_1043_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10787..11125)
DNA (339bp) protein (113aa)
hypothetical protein id=12496949 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96754.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RTP_11222018_0_1um_scaffold_1043_12

Not on your lists

comp(11129..12196)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QUH9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10902.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
3-deoxy-D-manno-octulosonic-acid transferase
RTP_11222018_0_1um_scaffold_1043_13
unknown

Not on your lists

comp(12249..12632)
DNA (384bp) protein (128aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_1043_14

Not on your lists

12693..13364
DNA (672bp) protein (224aa)
helicase-associated endonuclease for fork-structured DNA (EC:2.7.7.-)
ERCC4 n=1 Tax=mine drainage metagenome RepID=E6QTQ8_9ZZZZ
ERCC4 {ECO:0000313|EMBL:CBI10630.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RTP_11222018_0_1um_scaffold_1043_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13366..14481
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKE3_THIDA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_11222018_0_1um_scaffold_1043_16

Not on your lists

14504..14749
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QTQ9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10631.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1043_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14757..16991
DNA (2235bp) protein (745aa)
diguanylate cyclase/phosphodiesterase id=12495183 bin=THIO_HI species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1043_18
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17110..19368)
DNA (2259bp) protein (753aa)
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:BAN34635.1}; EC=3.4.21.92 {ECO:0000313|EMBL:BAN34635.1};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpA n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9S8_9PROT
RTP_11222018_0_1um_scaffold_1043_19
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19369..19671)
DNA (303bp) protein (101aa)
ATP-dependent Clp protease adapter protein ClpS n=2 Tax=Pseudogulbenkiania RepID=G2IXV2_PSEUL
clpS; ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
RTP_11222018_0_1um_scaffold_1043_20
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19916..20119
DNA (204bp) protein (68aa)
Cold-shock DNA-binding protein family n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AEG3_NITEC
cold-shock DNA-binding domain-containing protein
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABI60269.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
RTP_11222018_0_1um_scaffold_1043_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20224..21465)
DNA (1242bp) protein (414aa)
icd; isocitrate dehydrogenase (NADP) (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9Q7_9PROT
RTP_11222018_0_1um_scaffold_1043_22
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21500..22060
DNA (561bp) protein (187aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
Pseudouridine synthase n=2 Tax=Methylovorus RepID=C6X9L8_METSD
rsuA; pseudouridine synthase
RTP_11222018_0_1um_scaffold_1043_23
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22162..22425
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO34966.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1043_24
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22543..22989
DNA (447bp) protein (149aa)
NUDIX hydrolase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQ29_SIDLE
Phosphatase NudJ {ECO:0000313|EMBL:GAO32389.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
NUDIX hydrolase
RTP_11222018_0_1um_scaffold_1043_25
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22986..23525
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9S6_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34625.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
RTP_11222018_0_1um_scaffold_1043_26
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23518..24474
DNA (957bp) protein (319aa)
tRNA 2-thiouridylase {ECO:0000313|EMBL:AKH38763.1}; EC=2.8.1.- {ECO:0000313|EMBL:AKH38763.1};; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
mnmA; tRNA 2-thiouridylase (EC:2.8.1.-)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Pseudomonas syringae pv. actinidiae ICMP 18804 RepID=S6R6J0_PSESF
RTP_11222018_0_1um_scaffold_1043_27

Not on your lists

comp(24512..24676)
DNA (165bp) protein (55aa)
Oligoribonuclease {ECO:0000313|EMBL:CBI10880.1}; EC=3.1.-.- {ECO:0000313|EMBL:CBI10880.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Oligoribonuclease n=1 Tax=mine drainage metagenome RepID=E6QUF7_9ZZZZ
exonuclease RNase T and DNA polymerase III
Displaying 27 items

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