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RTP_11222018_0_1um_scaffold_1068

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1068_1

Not on your lists

comp(3..434)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QS51_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10073.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1068_2
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

533..1492
DNA (960bp) protein (320aa)
beta lactamase id=12497315 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
soxH; beta lactamase
Tax=RBG_16_Betaproteobacteria_58_11_curated
RTP_11222018_0_1um_scaffold_1068_3
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1492..2316
DNA (825bp) protein (275aa)
Type II secretory pathway, component PulD n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QKA2_AZOSU
type II secretory pathway, component PulD
Tax=BJP_IG2103_Dechloromonas_60_92
RTP_11222018_0_1um_scaffold_1068_4
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

2617..3627
DNA (1011bp) protein (337aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF24138.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
Divergent AAA region id=3124737 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
transcriptional regulator
RTP_11222018_0_1um_scaffold_1068_5
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

3606..3944
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF24138.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
Putative transcriptional regulator id=4767054 bin=GWC2_Elusimicrobia_51_8 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
ATP-dependent DNA helicase
RTP_11222018_0_1um_scaffold_1068_6
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4244..4534
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI0003675C49
DNA polymerase subunit beta
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_1068_7
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4531..5067
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B4BE01
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_1068_8
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5085..5384
DNA (300bp) protein (100aa)
DNA polymerase III subunit beta n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G392_9GAMM
DNA polymerase III subunit beta
DNA polymerase III subunit beta {ECO:0000313|EMBL:AJP48553.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_11222018_0_1um_scaffold_1068_9
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5381..5815
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G391_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP48552.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
RTP_11222018_0_1um_scaffold_1068_10
Massilia consociata, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6154..6423
DNA (270bp) protein (90aa)
Uncharacterized protein n=9 Tax=Enterococcus faecium RepID=J6PUR6_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:KFI08776.1}; TaxID=760117 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia consociata.;"
putative O-antigen flippase
RTP_11222018_0_1um_scaffold_1068_11
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6664..6999
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002D99A45
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
RTP_11222018_0_1um_scaffold_1068_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6996..8078
DNA (1083bp) protein (361aa)
GDP-mannose 4,6-dehydratase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003744ED4
GDP-mannose 4,6-dehydratase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1068_13
CG_Gallio_02, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8154..8378
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BJL5_CHLPD
hypothetical protein
Tax=CG_Gallio_02
RTP_11222018_0_1um_scaffold_1068_14
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8499..8750
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SB11_PELPB
hypothetical protein
Tax=BJP_IG2158_Methylococcales_50_91
RTP_11222018_0_1um_scaffold_1068_15
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8747..9226
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G6E5_9GAMM
hypothetical protein
Tax=BJP_IG2158_Methylococcales_50_91
RTP_11222018_0_1um_scaffold_1068_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9294..10280
DNA (987bp) protein (329aa)
GDP-L-fucose synthetase id=1295753 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GDP-L-fucose synthetase
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1068_17
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

10912..11583
DNA (672bp) protein (224aa)
Methyltransferase type 11 {ECO:0000313|EMBL:KKQ05805.1}; TaxID=1618713 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE2_36_40.;"
Methyltransferase type 11 id=3327956 bin=GWF2_Ignavibacteria_33_9 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
type 11 methyltransferase
RTP_11222018_0_1um_scaffold_1068_18
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11930..12193
DNA (264bp) protein (88aa)
hexapeptide transferase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI000374BE7B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ57641.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
RTP_11222018_0_1um_scaffold_1068_19
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12300..13058
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M578_GEODF
hypothetical protein
SAM-dependent methyltransferase, putative {ECO:0000313|EMBL:ACM19833.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
RTP_11222018_0_1um_scaffold_1068_20
GWF2_Sulfurimonas_37_8_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

13112..14398
DNA (1287bp) protein (429aa)
Tax=GWF2_Sulfurimonas_37_8_curated
RTP_11222018_0_1um_scaffold_1068_21
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14415..15308
DNA (894bp) protein (298aa)
Glycosyl transferase, family 11 id=2725987 bin=GWF2_Syntrophobacterales_56_9 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
glycosyl transferase family 11
Tax=GWC2_Geobacteraceae_53_11_curated
RTP_11222018_0_1um_scaffold_1068_22
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15305..16294
DNA (990bp) protein (330aa)
Glycosyl transferase n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HNB2_9BURK
Glycosyl transferase {ECO:0000313|EMBL:EJN00871.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
glycosyl transferase family protein
RTP_11222018_0_1um_scaffold_1068_23
GWF2_Sulfurimonas_37_8_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

16296..17423
DNA (1128bp) protein (376aa)
Glycosyl transferase, group 1 n=1 Tax=Helicobacter bizzozeronii CCUG 35545 RepID=H5VBS5_HELBI
group 1 glycosyl transferase
Tax=GWF2_Sulfurimonas_37_8_curated
RTP_11222018_0_1um_scaffold_1068_24
Mariprofundus ferrooxydans, Mariprofundus, Mariprofundales, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17462..18331
DNA (870bp) protein (290aa)
glycosyltransferase (EC:2.4.1.-)
Glycosyl transferase domain protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYK5_9PROT
Glycosyl transferase domain protein {ECO:0000313|EMBL:EAU54362.1}; TaxID=314345 species="Bacteria; Proteobacteria; Zetaproteobacteria; Mariprofundales; Mariprofundaceae; Mariprofundus.;" source="Mariprofundus ferrooxydans PV-1.;"
RTP_11222018_0_1um_scaffold_1068_25
Legionella massiliensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18334..19251
DNA (918bp) protein (306aa)
UDP-glucose 4-epimerase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BAZ3_9BURK
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDZ76236.1}; dTDP-4-dehydro-6-deoxyglucose reductase {ECO:0000313|EMBL:CEE11974.1}; TaxID=1034943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella massiliensis.;"
NAD-dependent epimerase/dehydratase
RTP_11222018_0_1um_scaffold_1068_26
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19340..19486
DNA (147bp) protein (49aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00036D68C6
prevent-host-death family protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
RTP_11222018_0_1um_scaffold_1068_27
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19559..19981
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00036E13E0
PilT domain protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
RTP_11222018_0_1um_scaffold_1068_28
Sulfurovum sp. FS08-3, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

20122..20310
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Sulfurovum sp. SCGC AAA036-F05 RepID=UPI0003773E2A
DNA polymerase subunit beta {ECO:0000313|EMBL:KIM13341.1}; TaxID=1539065 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum sp. FS08-3.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1068_29
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20307..20780
DNA (474bp) protein (158aa)
toxin-antitoxin system antitoxin subunit n=1 Tax=Hippea alviniae RepID=UPI0003B3C51E
hypothetical protein
Tax=CG_Thiomicrospira_01
RTP_11222018_0_1um_scaffold_1068_30
CG_Mariprof_01, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20881..21981
DNA (1101bp) protein (367aa)
Putative Capsular polysaccharide biosynthesis glycosyl transferase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYK6_9PROT
group 1 glycosyl transferase
Tax=CG_Mariprof_01
Displaying items 1-30 of 32 in total

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