ggKbase home page

RTP_11222018_0_1um_scaffold_1591

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RTP_11222018_0_1um_scaffold_1591_1
unknown

Not on your lists

1..99
DNA (99bp) protein (33aa)

This feature has no annotations

RTP_11222018_0_1um_scaffold_1591_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89..721
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CA8C4
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
RTP_11222018_0_1um_scaffold_1591_3
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(726..1949)
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRZ1_SIDLE
hypothetical protein
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_1591_4
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1946..2641)
DNA (696bp) protein (232aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QG95_AZOSU
antimicrobial peptide ABC transporter ATPase
Tax=CG_Gallio_01
RTP_11222018_0_1um_scaffold_1591_5
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2644..3789)
DNA (1146bp) protein (382aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRY9_SIDLE
efflux transporter, RND family, MFP subunit
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_1591_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3786..4079)
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2W866_DELAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD42294.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
RTP_11222018_0_1um_scaffold_1591_7
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4134..5510)
DNA (1377bp) protein (459aa)
Outer membrane efflux protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CRY8_SIDLE
outer membrane efflux protein
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_1591_8
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5544..6362
DNA (819bp) protein (273aa)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GGB7_NITSI
Formamidopyrimidine-DNA glycosylase
Tax=GWA2_Gallionellales_60_142_curated
RTP_11222018_0_1um_scaffold_1591_9

Not on your lists

6432..8393
DNA (1962bp) protein (654aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWY8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11762.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1591_10

Not on your lists

comp(8523..10496)
DNA (1974bp) protein (658aa)
Putative glutathione-regulated potassium-efflux system protein kefB (K(+)/H(+) antiporter) (NEM-activable K(+)/H(+) antiporter) KefB-like n=1 Tax=mine drainage metagenome RepID=E6QSF0_9ZZZZ
Putative glutathione-regulated potassium-efflux system protein kefB (K(+)/H(+) antiporter) (NEM-activable K(+)/H(+) antiporter) KefB-like {ECO:0000313|EMBL:CBI10172.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
potassium efflux system protein
RTP_11222018_0_1um_scaffold_1591_11

Not on your lists

10598..11593
DNA (996bp) protein (332aa)
Arabinose 5-phosphate isomerase {ECO:0000313|EMBL:CBI10173.1}; EC=5.3.1.13 {ECO:0000313|EMBL:CBI10173.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Arabinose 5-phosphate isomerase n=1 Tax=mine drainage metagenome RepID=E6QSF1_9ZZZZ
capsule expression protein KpsF/GutQ
RTP_11222018_0_1um_scaffold_1591_12
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11597..12121
DNA (525bp) protein (175aa)
Putative 3-Deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P phosphatase) kdsC-like n=1 Tax=mine drainage metagenome RepID=E6QSF2_9ZZZZ
phosphatase kdsC
Tax=CG_Beta_01
RTP_11222018_0_1um_scaffold_1591_13

Not on your lists

12118..12690
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSF3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10175.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1591_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12674..13270
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037225EE
OstA-like family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
RTP_11222018_0_1um_scaffold_1591_15

Not on your lists

13267..13989
DNA (723bp) protein (241aa)
Putative ABC-type transport system, ATPase component n=1 Tax=mine drainage metagenome RepID=E6QSF5_9ZZZZ
Putative ABC-type transport system, ATPase component {ECO:0000313|EMBL:CBI10177.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ABC transporter-like protein
RTP_11222018_0_1um_scaffold_1591_16

Not on your lists

14015..15046
DNA (1032bp) protein (344aa)
RNA polymerase, sigma 54 (Sigma N) factor n=1 Tax=mine drainage metagenome RepID=E6QSF6_9ZZZZ
RNA polymerase, sigma 54 (Sigma N) factor {ECO:0000313|EMBL:CBI10178.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
RNA polymerase sigma-54 factor
RTP_11222018_0_1um_scaffold_1591_17

Not on your lists

15226..15576
DNA (351bp) protein (117aa)
Putative sigma(54) modulation protein RpoX n=1 Tax=mine drainage metagenome RepID=E6QSF7_9ZZZZ
Putative sigma(54) modulation protein RpoX {ECO:0000313|EMBL:CBI10179.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sigma 54 modulation protein
RTP_11222018_0_1um_scaffold_1591_18

Not on your lists

15588..16043
DNA (456bp) protein (152aa)
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=mine drainage metagenome RepID=E6QSF8_9ZZZZ
Putative PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:CBI10180.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PTS IIA-like nitrogen-regulatory protein PtsN
RTP_11222018_0_1um_scaffold_1591_19

Not on your lists

16031..16984
DNA (954bp) protein (318aa)
Putative HPr kinase/phosphorylase (HPrK/P) (HPr(Ser) kinase/phosphorylase) HprK {ECO:0000313|EMBL:CBI10181.1}; EC=2.7.1.- {ECO:0000313|EMBL:CBI10181.1};; EC=2.7.4.- {ECO:0000313|EMBL:CBI10181.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Putative HPr kinase/phosphorylase (HPrK/P) (HPr(Ser) kinase/phosphorylase) HprK n=1 Tax=mine drainage metagenome RepID=E6QSF9_9ZZZZ
HPr kinase
RTP_11222018_0_1um_scaffold_1591_20

Not on your lists

16981..17838
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSG0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10182.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1591_21

Not on your lists

17840..18220
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSG1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10183.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
RTP_11222018_0_1um_scaffold_1591_22

Not on your lists

18201..18728
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QSG2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI10184.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
heptaprenyl diphosphate synthase component I
RTP_11222018_0_1um_scaffold_1591_23
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18709..19323
DNA (615bp) protein (205aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=2 Tax=Thauera RepID=C4ZIT7_THASP
aromatic acid decarboxylase
RTP_11222018_0_1um_scaffold_1591_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19320..19961
DNA (642bp) protein (214aa)
Peptidase S16, lon domain protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJH4_AZOSU
peptidase S16, lon domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
RTP_11222018_0_1um_scaffold_1591_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20097..20480)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003639506
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
RTP_11222018_0_1um_scaffold_1591_26
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20647..21066
DNA (420bp) protein (140aa)
Large-conductance mechanosensitive channel n=1 Tax=Azoarcus sp. (strain BH72) RepID=MSCL_AZOSB
mscL; large-conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000255|HAMAP-Rule:MF_00115}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
RTP_11222018_0_1um_scaffold_1591_27
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21161..21286)
DNA (126bp) protein (42aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALMg13-2 RepID=UPI000377709D
UvrD/REP helicase
Tax=RBG_16_Betaproteobacteria_56_24_curated
RTP_11222018_0_1um_scaffold_1591_28

Not on your lists

comp(21286..22533)
DNA (1248bp) protein (416aa)
AAA family ATPase (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AGN3_9ZZZZ
AAA family ATPase {ECO:0000313|EMBL:EQD55808.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
AAA family ATPase
RTP_11222018_0_1um_scaffold_1591_29

Not on your lists

comp(22659..23444)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QWZ1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11765.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sporulation domain-containing protein
Displaying 29 items

View Taxonomy