ggKbase home page

14_0927_12_20cm_scaffold_73

Search features with annotation key words

Displaying items 1-30 of 159 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0927_12_20cm_scaffold_73_1
unknown

Not on your lists

comp(259..429)
DNA (171bp) protein (57aa)

This feature has no annotations

14_0927_12_20cm_scaffold_73_2
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(469..1740)
DNA (1272bp) protein (424aa)
von Willebrand factor, type A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ2_KORVE
von Willebrand factor A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
14_0927_12_20cm_scaffold_73_3
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(1823..3352)
DNA (1530bp) protein (510aa)
Magnesium protoporphyrin chelatase, putative n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025X1_SOLUE
magnesium protoporphyrin chelatase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
14_0927_12_20cm_scaffold_73_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(3467..4087)
DNA (621bp) protein (207aa)
Peptidase S16, lon-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARW4_RUBXD
peptidase S16, lon-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
14_0927_12_20cm_scaffold_73_5
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4252..5496
DNA (1245bp) protein (415aa)
multidrug ABC transporter substrate-binding protein n=1 Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B6485F
ABC transporter permease
Tax=RBG_16_Deltaproteobacteria_48_10_curated
14_0927_12_20cm_scaffold_73_6
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5512..6795
DNA (1284bp) protein (428aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Geobacter sp. (strain M18) RepID=E8WJJ6_GEOS8
RND family efflux transporter MFP subunit
Tax=RBG_16_Deltaproteobacteria_47_11_curated
14_0927_12_20cm_scaffold_73_7
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

6817..7617
DNA (801bp) protein (267aa)
ABC transporter related n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZXC6_OPITP
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACB76921.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
14_0927_12_20cm_scaffold_73_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(7881..9431)
DNA (1551bp) protein (517aa)
Protease Do n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024W1_SOLUE
protease Do
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
14_0927_12_20cm_scaffold_73_9
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(9610..10005)
DNA (396bp) protein (132aa)
Heat shock protein Hsp20 id=3343143 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
molecular chaperone
Tax=GWC2_Nitrospirae_56_14_curated
14_0927_12_20cm_scaffold_73_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10236..10577)
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILJ5_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF42255.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
14_0927_12_20cm_scaffold_73_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

10668..11180
DNA (513bp) protein (171aa)
Thioesterase domain protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F7I2_ACIC5
thioesterase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
14_0927_12_20cm_scaffold_73_12
Synechococcus sp. JA-3-3Ab, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(11209..12570)
DNA (1362bp) protein (454aa)
hemG; protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase {ECO:0000313|EMBL:ABC99290.1}; EC=1.3.3.4 {ECO:0000313|EMBL:ABC99290.1};; TaxID=321327 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium; Yellowstone A-Prime).;"
hypothetical protein n=1 Tax=Spirulina subsalsa RepID=UPI0002D8DD67 rbh
14_0927_12_20cm_scaffold_73_13
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(12595..14007)
DNA (1413bp) protein (471aa)
Coproporphyrinogen-III oxidase n=3 Tax=Leptospirillum RepID=J9ZAB2_LEPFM rbh
coproporphyrinogen III oxidase
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
14_0927_12_20cm_scaffold_73_14
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(14020..15090)
DNA (1071bp) protein (357aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Uroporphyrinogen decarboxylase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGS0_CHLTF
14_0927_12_20cm_scaffold_73_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15232..16089
DNA (858bp) protein (286aa)
ResC/HemX-like cytochrome c biogenesis membrane protein n=2 Tax=Geobacter sulfurreducens RepID=D7AFL0_GEOSK
ResC/HemX-like cytochrome c biogenesis membrane protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
14_0927_12_20cm_scaffold_73_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

16108..17385
DNA (1278bp) protein (426aa)
Glutamyl-tRNA reductase n=1 Tax=Beggiatoa alba B18LD RepID=I3CDW0_9GAMM
hemA: glutamyl-tRNA reductase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
14_0927_12_20cm_scaffold_73_17
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17391..18299
DNA (909bp) protein (303aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1073383 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii AMC34.;"
porphobilinogen deaminase n=1 Tax=Psychromonas hadalis RepID=UPI0003B77120
Porphobilinogen deaminase
14_0927_12_20cm_scaffold_73_18
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18292..19122
DNA (831bp) protein (277aa)
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase (EC:2.1.1.107 4.2.1.75)
Uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RJ27_MOOTA
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP67627.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
14_0927_12_20cm_scaffold_73_19
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19119..20096
DNA (978bp) protein (326aa)
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YJW7_THEYD
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
14_0927_12_20cm_scaffold_73_20
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

20173..21501
DNA (1329bp) protein (443aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=667014 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfatator.;" source="Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812).;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A8E1_THEID
glutamate-1-semialdehyde-2,1-aminomutase
14_0927_12_20cm_scaffold_73_21
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

21526..22071
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X216_ACISM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW70259.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
14_0927_12_20cm_scaffold_73_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(22074..22661)
DNA (588bp) protein (196aa)
Membrane protein-like protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NM0_SOLUE
Predicted membrane protein {ECO:0000313|EMBL:CDM66770.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
14_0927_12_20cm_scaffold_73_23
unknown

Not on your lists

comp(23840..24271)
DNA (432bp) protein (144aa)

This feature has no annotations

14_0927_12_20cm_scaffold_73_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(24268..24783)
DNA (516bp) protein (172aa)
Integrase core domain protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BNU8_9ZZZZ
putative transposase orfA for insertion sequence element
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
14_0927_12_20cm_scaffold_73_25
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(25032..26435)
DNA (1404bp) protein (468aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:CDM65792.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CDM65792.1};; EC=6.3.5.7 {ECO:0000313|EMBL:CDM65792.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=24505316 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases (EC:6.3.5.6 6.3.5.7)
14_0927_12_20cm_scaffold_73_26
unknown

Not on your lists

comp(26435..26872)
DNA (438bp) protein (146aa)

This feature has no annotations

14_0927_12_20cm_scaffold_73_27
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26979..29672)
DNA (2694bp) protein (898aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F7536 rbh
permease
Putative permease {ECO:0000313|EMBL:ABF85947.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
14_0927_12_20cm_scaffold_73_28
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(29710..32472)
DNA (2763bp) protein (921aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023P0_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ83800.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
14_0927_12_20cm_scaffold_73_29
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(32492..32824)
DNA (333bp) protein (111aa)
PadR family transcripitonal regulator n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036050DE
PadR family transcriptional regulator
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:ADV83317.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
14_0927_12_20cm_scaffold_73_30
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(33012..33782)
DNA (771bp) protein (257aa)
Putative Response regulator n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGH0_9BACT
putative response regulator
Putative Response regulator {ECO:0000313|EMBL:CBK42357.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Displaying items 1-30 of 159 in total

View Taxonomy