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RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_1
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

393..1028
DNA (636bp) protein (212aa)
MerR family transcriptional regulator Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Putative transcriptional regulator, MerR family id=4263457 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
MerR family transcriptional regulator
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_2
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

1028..1258
DNA (231bp) protein (77aa)
YcfA family protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PFQ8_9CYAN
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
hypothetical protein
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_3
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

1332..1604
DNA (273bp) protein (91aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_trna_1
unknown

Not on your lists

comp(1707..1780)
DNA (74bp)
transferRNA
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_4
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

1890..2741
DNA (852bp) protein (284aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Proline dehydrogenase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C8A2_SPHTD
proline dehydrogenase
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_5
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

2763..3542
DNA (780bp) protein (260aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_6
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

3623..4066
DNA (444bp) protein (148aa)
Rhodanese-related sulfurtransferase protein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Rhodanese-related sulfurtransferase protein id=4583992 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Cycloclasticus taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Rhodanese-related sulfurtransferase protein
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_7
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(4068..5903)
DNA (1836bp) protein (612aa)
cytochrome b/b6 Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
4Fe-4S ferredoxin iron-sulfur binding domain protein id=4583991 bin=GWC2_Deltaproteobacteria_42_51 species=Hydrogenobacter thermophilus genus=Hydrogenobacter taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
cytochrome b/b6
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_8
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(6181..6414)
DNA (234bp) protein (78aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Putative uncharacterized protein id=2217865 bin=GWB2_CP_45_9 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_9
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(6429..7754)
DNA (1326bp) protein (442aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.99.5)
NADH-quinone oxidoreductase, subunit F n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJ07_9BACT
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_10
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(7751..9868)
DNA (2118bp) protein (706aa)
cytochrome b/b6-like Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
4Fe-4S ferredoxin iron-sulfur binding domain protein id=4583991 bin=GWC2_Deltaproteobacteria_42_51 species=Hydrogenobacter thermophilus genus=Hydrogenobacter taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
cytochrome b/b6-like
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_11
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(9999..11009)
DNA (1011bp) protein (337aa)
hypothetical protein; K07152 Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Uncharacterized protein SCO1/SenC/PrrC id=4583995 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_12
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(11024..11929)
DNA (906bp) protein (302aa)
ctaB; protoheme IX farnesyltransferase (EC:2.5.1.-)
Protoheme IX farnesyltransferase Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Protoheme IX farnesyltransferase 1 id=2430838 bin=GWC2_Deltaproteobacteria_55_46 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_13
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

comp(12007..12138)
DNA (132bp) protein (44aa)
Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_14
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(12149..13690)
DNA (1542bp) protein (514aa)
cytochrome c oxidase subunit I Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Heme/copper-type cytochrome/quinol oxidase, subunit 1 id=3823489 bin=GWF2_Methylomirabilis_70_14 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c oxidase subunit I
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_15
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(13766..14293)
DNA (528bp) protein (176aa)
cyoA; heme/copper-type cytochrome/quinol oxidase subunit 2; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Cytochrome c oxidase subunit II id=4589781 bin=GWC2_Deltaproteobacteria_56_8 species=Hydrogenobacter thermophilus genus=Hydrogenobacter taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
cyoA; heme/copper-type cytochrome/quinol oxidase subunit 2
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_16
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(14312..14467)
DNA (156bp) protein (52aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_17
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(14594..15883)
DNA (1290bp) protein (430aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Uncharacterized protein id=4816146 bin=GWC2_Deltaproteobacteria_55_46 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_18
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(16104..17117)
DNA (1014bp) protein (338aa)
Dissimilatory nitrite reductase (NO-forming), copper type apoprotein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B638_TURPD
dissimilatory nitrite reductase (NO-forming), copper type apoprotein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
dissimilatory nitrite reductase (NO-forming), copper type apoprotein
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_19
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(17172..17702)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF0_9BACT
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
hypothetical protein
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_20
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(18120..18728)
DNA (609bp) protein (203aa)
multi-sensor signal transduction histidine kinase Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Two component system histidine kinase id=3358997 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
multi-sensor signal transduction histidine kinase
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_21
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(18730..19116)
DNA (387bp) protein (129aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_22
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(19297..20022)
DNA (726bp) protein (242aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
RNA methyltransferase, TrmH family, group 3 n=2 Tax=Thermoanaerobacter RepID=B0KCI1_THEP3
RNA methyltransferase
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_23
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(20113..21573)
DNA (1461bp) protein (487aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
cysS; cysteine--tRNA ligase (EC:6.1.1.16)
Cysteine--tRNA ligase n=2 Tax=Geobacter metallireducens RepID=SYC_GEOMG
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_431_24
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

21753..23126
DNA (1374bp) protein (458aa)
Glycolate oxidase subunit GlcD n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LEH8_THEPS
glcD1; glycolate oxidase subunit GlcD Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
glcD1; glycolate oxidase subunit GlcD
Displaying 25 items

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