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RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_1
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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68..1081
-----------------
DNA (1014bp)
protein (338aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZEC8_9BACT
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_2
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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1143..2486
-----------------
DNA (1344bp)
protein (448aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Phosphomethylpyrimidine kinase n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QR79_VULDI
phosphomethylpyrimidine kinase
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_3
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(2473..3222)
-----------------
DNA (750bp)
protein (250aa)
biotin/lipoate A/B protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
lipM; Octanoyltransferase LipM (EC:2.3.1.181)
Octanoyltransferase LipM n=1 Tax=Bacillus methanolicus MGA3 RepID=I3EAE2_BACMT
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_4
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(3276..4451)
-----------------
DNA (1176bp)
protein (392aa)
Doubled CXXCH domain protein Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Doubled CXXCH domain protein id=4847340 bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_5
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(4541..5647)
-----------------
DNA (1107bp)
protein (369aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RifCSPlowO2_12_Nitrospinae_3
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
PAS/PAC sensor signal transduction histidine kinase id=3660719 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_6
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(5644..6330)
-----------------
DNA (687bp)
protein (229aa)
putative two component transcriptional regulator, winged helix family Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Two component transcriptional regulator, winged helix family id=3660720 bin=GWC2_Deltaproteobacteria_42_51 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
putative two component transcriptional regulator, winged helix family
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_7
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(6327..7115)
-----------------
DNA (789bp)
protein (263aa)
bacA; UDP pyrophosphate phosphatase (EC:2.7.1.66); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
bacA; UDP pyrophosphate phosphatase (EC:2.7.1.66)
Undecaprenyl-diphosphatase id=2281071 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RifCSPlowO2_12_DPX4_39_16_rifcsplowo2_12_sub10_scaffold_1443_8
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(7115..7402)
-----------------
DNA (288bp)
protein (96aa)
protein-tyrosine phosphatase, low molecular weight (EC:1.20.4.1) Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
protein-tyrosine phosphatase, low molecular weight (EC:1.20.4.1)
protein-tyrosine phosphatase id=24426365 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Dyella japonica genus=Dyella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Displaying 8 items

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