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RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417

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Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3..839)
DNA (837bp) protein (279aa)
enolase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SIP6_GALCS
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(970..2226)
DNA (1257bp) protein (419aa)
Homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CW90_HALOH
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

2289..3128
DNA (840bp) protein (280aa)
glycosyl transferase family protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Glycosyl transferase family 2 id=1959872 bin=GWE2_RBX1_39_32 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glycosyl transferase family 2 protein
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3118..3678)
DNA (561bp) protein (187aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3955..4800)
DNA (846bp) protein (282aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UCP5_9CHRO
metalloendopeptidase-like membrane protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
metalloendopeptidase-like membrane protein
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(4877..5236)
DNA (360bp) protein (120aa)
aspartate 1-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LVL8_DESBD
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(5293..6375)
DNA (1083bp) protein (361aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Nucleotidyl transferase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGS0_9FIRM
nucleotidyl transferase
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(6398..6838)
DNA (441bp) protein (147aa)
ribose-5-phosphate isomerase; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Ribose 5-phosphate isomerase B n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6RXZ5_9FIRM
ribose-5-phosphate isomerase
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(6835..7545)
DNA (711bp) protein (237aa)
pdxJ; pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Pyridoxine 5'-phosphate synthase id=4665925 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
pdxJ; pyridoxine 5'-phosphate synthase
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(7588..8205)
DNA (618bp) protein (206aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(8355..9077)
DNA (723bp) protein (241aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(9149..9592)
DNA (444bp) protein (148aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

9868..11118
DNA (1251bp) protein (417aa)
Collagenase family protease n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EMC5_CLOPA
collagenase-like protease Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
peptidase, U32 family protein
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(11115..12155)
DNA (1041bp) protein (347aa)
nifR3 family TIM-barrel protein; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
tRNA-dihydrouridine synthase n=2 Tax=Dorea RepID=A6BF05_9FIRM
nifR3 family TIM-barrel protein
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12237..12806
DNA (570bp) protein (190aa)
glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Glycerol-3-phosphate acyltransferase n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DMT2_9FIRM
glycerol-3-phosphate acyltransferase
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12803..13792
DNA (990bp) protein (330aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] id=2217515 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(13893..15206)
DNA (1314bp) protein (438aa)
type IV pilus secretin PilQ; K02666 type IV pilus assembly protein PilQ Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Type II and III secretion system protein id=1960119 bin=GWD2_RBX1-related_39_127 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
pilus assembly protein PilQ
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(15206..15730)
DNA (525bp) protein (175aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(15730..16242)
DNA (513bp) protein (171aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(16239..17882)
DNA (1644bp) protein (548aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Type IV pilus assembly protein PilM id=4845059 bin=GWC2_OP3_44_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
pilM; type IV pilus biogenesis ATPase PilM
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(18040..19314)
DNA (1275bp) protein (425aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_22
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(19431..20690)
DNA (1260bp) protein (420aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_23
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(20687..21202)
DNA (516bp) protein (172aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_24
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(21189..21581)
DNA (393bp) protein (131aa)
id=1979036 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
id=1979036 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_25
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(21578..22093)
DNA (516bp) protein (172aa)
Type II secretion system minor pseudopilin GspH Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Type II secretion system minor pseudopilin GspH id=4128011 bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_26
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(22197..22598)
DNA (402bp) protein (134aa)
mannose-sensitive hemagglutinin a (partial); K10924 MSHA pilin protein MshA Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative fimbrial protein id=3078993 bin=GWA2_OP3_52_12 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
mannose-sensitive hemagglutinin a (partial)
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_27
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(22810..23193)
DNA (384bp) protein (128aa)
putative fimbrial protein; K02456 general secretion pathway protein G Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative fimbrial protein id=3078993 bin=GWA2_OP3_52_12 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
putative fimbrial protein
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_28
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(23292..24512)
DNA (1221bp) protein (407aa)
type II secretion system F domain-containing protein; K12278 MSHA biogenesis protein MshG Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Type II secretion system F domain protein id=4847852 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
type II secretion system F domain-containing protein
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_29
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(24569..26239)
DNA (1671bp) protein (557aa)
type II secretion system protein E n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B7812C
type IV pilus assembly protein PilB; K02652 type IV pilus assembly protein PilB Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
type IV pilus assembly protein PilB
RifOxyA12_full_CP_36_13_rifixya3_full_scaffold_417_30
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(26240..26617)
DNA (378bp) protein (126aa)
Adenylate/guanylate cyclase n=1 Tax=uncultured bacterium RepID=K2A2C2_9BACT
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Displaying items 1-30 of 41 in total

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