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ACD10_99

Alias: ACD10_3959.2914.25

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD10_99_1

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comp(1..384)
DNA (384bp) protein (128aa)
50S ribosomal protein L6 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1M8_ACIDE (db=UNIREF evalue=4.0e-62 bit_score=239.0 identity=91.41 coverage=99.21875)
rplF; 50S ribosomal protein L6
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=2 to=128 evalue=7.8e-40 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=128 evalue=7.8e-40)
not used in concatenation tree kelly wrighton (11/14/12)
ACD10_99_2
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(410..805)
DNA (396bp) protein (132aa)
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 n=7 Tax=Comamonadaceae RepID=RS8_ACIAC (db=UNIREF evalue=2.0e-65 bit_score=250.0 identity=94.66 coverage=98.4848484848485)
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=101 to=118 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=5 to=130 evalue=9.4e-49 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
not used in concatenation tree kelly wrighton (11/14/12)
ACD10_99_3

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comp(826..1131)
DNA (306bp) protein (102aa)
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 n=2 Tax=Polaromonas RepID=RS14_POLSJ (db=UNIREF evalue=3.0e-44 bit_score=180.0 identity=89.11 coverage=98.0392156862745)
CHLOROPLAST 30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836:SF1 from=1 to=101 evalue=1.1e-52)
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=1 to=101 evalue=1.1e-52 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD10_99_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1140..2114)
DNA (975bp) protein (325aa)
50S ribosomal protein L5 n=10 Tax=Comamonadaceae RepID=RL5_ACIAC (db=UNIREF evalue=4.0e-93 bit_score=345.0 identity=96.0 coverage=53.5384615384615)
rplE; 50S ribosomal protein L5
rplE; 50S ribosomal protein L5
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=202 to=218 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD10_99_5

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comp(2124..2444)
DNA (321bp) protein (107aa)
50S ribosomal protein L24 n=8 Tax=Comamonadaceae RepID=RL24_ACIAC (db=UNIREF evalue=1.0e-51 bit_score=204.0 identity=96.23 coverage=98.1308411214953)
rplX; 50S ribosomal protein L24
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=7 to=24 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=103 evalue=6.5e-41 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
not used in concatenation kelly wrighton (11/14/12)
ACD10_99_6

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comp(2454..2822)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=14 Tax=Burkholderiales RepID=RL14_ACIAC (db=UNIREF evalue=1.0e-60 bit_score=234.0 identity=96.72 coverage=98.3739837398374)
rplN; 50S ribosomal protein L14
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=3.2e-81 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD10_99_7

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comp(2871..2960)
DNA (90bp) protein (30aa)
2871..2960 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE17481.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 7 items

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