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ACD1_55

Alias: ACDUNK_660.87465.91

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_55_1

Not on your lists

comp(298..1290)
DNA (993bp) protein (331aa)
gapA; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
gapA; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde 3-phosphate dehydrogenase n=1 Tax=Clostridium tetani RepID=Q898R4_CLOTE (db=UNIREF evalue=1.0e-98 bit_score=363.0 identity=57.19 coverage=99.0936555891239)
seg (db=Seg db_id=seg from=106 to=117)
ACD1_55_2

Not on your lists

comp(1394..1669)
DNA (276bp) protein (92aa)
HypA (db=HMMPfam db_id=PF01155 from=1 to=81 evalue=6.8e-07 interpro_id=IPR000688 interpro_description=Hydrogenase nickel incorporation protein HypA/HybF GO=Biological Process: protein modification process (GO:0006464), Molecular Function: nickel ion binding (GO:0016151))
Uncharacterized protein {ECO:0000313|EMBL:EKE11963.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD1_55_3
GWC2_OD1_48_17, Parcubacteria, Bacteria

Not on your lists

comp(1761..2972)
DNA (1212bp) protein (404aa)
hypothetical protein
seg (db=Seg db_id=seg from=323 to=336)
seg (db=Seg db_id=seg from=285 to=298)
seg (db=Seg db_id=seg from=239 to=251)
ACD1_55_4

Not on your lists

comp(2994..4256)
DNA (1263bp) protein (421aa)
hypothetical protein
seg (db=Seg db_id=seg from=99 to=118)
NI_HGENASE_L_2 (db=PatternScan db_id=PS00508 from=411 to=420 evalue=0.0 interpro_id=IPR018194 interpro_description=Nickel-dependent hydrogenase, large subunit, nickel binding site GO=Molecular Function: ferredoxin hydrogenase activity (GO:0008901), Molecular Function: nickel ion binding (GO:0016151), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.10.645.10 from=2 to=420 evalue=8.5e-85)
ACD1_55_5

Not on your lists

comp(4299..4577)
DNA (279bp) protein (93aa)
Uncharacterized protein {ECO:0000313|EMBL:EKD58903.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD1_55_6
R_OP11_Levybacteria_36_15, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(4579..4941)
DNA (363bp) protein (121aa)
hypothetical protein
seg (db=Seg db_id=seg from=88 to=99)
hypothetical protein alias=ACD1_C00055G00006,ACDUNK_660.87465.91G0006,ACDUNK_660.87465.91_6 id=17245 tax=ACD1 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Levybacteria_36_15_curated
ACD1_55_7

Not on your lists

comp(4971..5849)
DNA (879bp) protein (293aa)
NADH ubiquinone oxidoreductase 20 kDa subunit
NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=D3RQF0_ALLVD (db=UNIREF evalue=3.0e-37 bit_score=159.0 identity=35.4 coverage=74.4027303754266)
seg (db=Seg db_id=seg from=20 to=37)
coiled-coil (db=Coil db_id=coil from=14 to=35 evalue=NA)
ACD1_55_8
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(5930..7228)
DNA (1299bp) protein (433aa)
(NiFe) hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF (db=KEGG evalue=2.0e-39 bit_score=167.0 identity=32.24 coverage=81.986143187067)
seg (db=Seg db_id=seg from=217 to=228)
(NiFe) hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF alias=ACD1_C00055G00008,ACDUNK_660.87465.91G0008,ACDUNK_660.87465.91_8 id=17236 tax=ACD1 species=Methanocaldococcus fervens genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_group=OD1-i organism_desc=OD1-i
ACD1_55_9
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7208..8197)
DNA (990bp) protein (330aa)
hydrogenase expression/formation protein HypE
seg (db=Seg db_id=seg from=283 to=288)
hypE: hydrogenase expression/formation prote (db=HMMTigr db_id=TIGR02124 from=8 to=329 evalue=1.1e-127 interpro_id=IPR011854 interpro_description=Hydrogenase expression/formation protein HypE)
[NiFe]-hydrogenase maturation factor, AIR synthase-related, HypE type (db=HMMPIR db_id=PIRSF005644 from=1 to=329 evalue=1.5e-126 interpro_id=IPR011854 interpro_description=Hydrogenase expression/formation protein HypE)
ACD1_55_10
GWE1_OD1-i_ACD11_lin_49_15, Moranbacteria, Parcubacteria, Bacteria

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comp(8202..8573)
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZDF1_9BACT (db=UNIREF evalue=1.0e-37 bit_score=158.0 identity=62.81 coverage=96.7741935483871)
hypothetical protein
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=6 to=112 evalue=2.0e-23 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
Uncharacterized protein {ECO:0000313|EMBL:KKW06914.1}; TaxID=1618710 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE1_49_15.;"
ACD1_55_11
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8606..9649)
DNA (1044bp) protein (348aa)
UPI0001D5AE2F related cluster n=1 Tax=unknown RepID=UPI0001D5AE2F (db=UNIREF evalue=1.0e-85 bit_score=320.0 identity=45.86 coverage=98.8505747126437)
hydrogenase expression/formation protein HypD
hydrogenase expression/formation protein HypD
[NiFe]-hydrogenase maturation factor, HypD type (db=HMMPIR db_id=PIRSF005622 from=1 to=347 evalue=2.2e-131 interpro_id=IPR002780 interpro_description=Hydrogenase formation HypD protein GO=Molecular Function: metal ion binding (GO:0046872))
ACD1_55_12
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9624..9842)
DNA (219bp) protein (73aa)
hydrogenase expression/formation protein HypC
HupF_HypC (db=HMMPfam db_id=PF01455 from=1 to=63 evalue=5.9e-26 interpro_id=IPR001109 interpro_description=Hydrogenase expression/formation protein, HupF/HypC)
hypC_hupF: hydrogenase assembly chaperone H (db=HMMTigr db_id=TIGR00074 from=1 to=58 evalue=9.9e-23 interpro_id=IPR001109 interpro_description=Hydrogenase expression/formation protein, HupF/HypC)
HUPFHYPC (db=FPrintScan db_id=PR00445 from=2 to=9 evalue=1.2e-12 interpro_id=IPR001109 interpro_description=Hydrogenase expression/formation protein, HupF/HypC)
ACD1_55_13
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(9857..10780)
DNA (924bp) protein (308aa)
fba; fructose-bisphosphate aldolase Fba (EC:4.1.2.13)
seg (db=Seg db_id=seg from=268 to=279)
ALDOLASE_CLASS_II_1 (db=PatternScan db_id=PS00602 from=72 to=85 evalue=0.0 interpro_id=IPR000771 interpro_description=Ketose-bisphosphate aldolase, class-II GO=Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332), Biological Process: glycolysis (GO:0006096), Molecular Function: zinc ion binding (GO:0008270))
Fructose-bisphosphate aldolase II (db=HMMPIR db_id=PIRSF001359 from=1 to=287 evalue=4.4e-100 interpro_id=IPR000771 interpro_description=Ketose-bisphosphate aldolase, class-II GO=Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332), Biological Process: glycolysis (GO:0006096), Molecular Function: zinc ion binding (GO:0008270))
ACD1_55_14

Not on your lists

comp(10925..11698)
DNA (774bp) protein (258aa)
tpiA; triose-phosphate isomerase (EC:5.3.1.1)
TIM_1 (db=PatternScan db_id=PS00171 from=167 to=177 evalue=0.0 interpro_id=IPR020861 interpro_description=Triosephosphate isomerase, active site)
TIM (db=HMMPfam db_id=PF00121 from=3 to=249 evalue=1.4e-75 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
TRIOSEPHOSPHATE ISOMERASE (db=HMMPanther db_id=PTHR21139 from=1 to=253 evalue=2.2e-73 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
ACD1_55_15
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11723..12202)
DNA (480bp) protein (160aa)
putative small multi-drug export protein
seg (db=Seg db_id=seg from=132 to=143)
seg (db=Seg db_id=seg from=117 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=158)
ACD1_55_16
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

comp(12385..13470)
DNA (1086bp) protein (362aa)
galactose-1-phosphate uridylyltransferase
Galactose-1-phosphate uridylyltransferase (db=HMMPIR db_id=PIRSF000808 from=12 to=359 evalue=8.8e-82 interpro_id=IPR001937 interpro_description=Galactose-1-phosphate uridyl transferase, class I GO=Biological Process: galactose metabolic process (GO:0006012), Molecular Function: UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108), Molecular Function: zinc ion binding (GO:0008270))
GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR11943 from=34 to=357 evalue=3.4e-56 interpro_id=IPR001937 interpro_description=Galactose-1-phosphate uridyl transferase, class I GO=Biological Process: galactose metabolic process (GO:0006012), Molecular Function: UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108), Molecular Function: zinc ion binding (GO:0008270))
no description (db=Gene3D db_id=G3DSA:3.30.428.10 from=204 to=358 evalue=1.0e-39 interpro_id=IPR011151 interpro_description=Histidine triad motif GO=Molecular Function: catalytic activity (GO:0003824))
ACD1_55_17

Not on your lists

comp(13533..14291)
DNA (759bp) protein (253aa)
glycosyltransferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=244 evalue=1.4e-32)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=13 to=248 evalue=2.9e-31)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=8 to=181 evalue=4.9e-26 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD1_55_18
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14389..15045)
DNA (657bp) protein (219aa)
Glycosyltransferase sugar-binding region containing DXD motif (fragment)
Gly_transf_sug (db=HMMPfam db_id=PF04488 from=43 to=77 evalue=7.9e-09 interpro_id=IPR007577 interpro_description=Glycosyltransferase, DXD sugar-binding region)
glycosyl transferase alias=ACD1_C00055G00018,ACDUNK_660.87465.91G0018,ACDUNK_660.87465.91_18 id=17249 tax=ACD1 species=Acidovorax citrulli genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
Glycosyltransferase sugar-binding region containing DXD motif {ECO:0000313|EMBL:CCO22242.1}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionace
ACD1_55_19
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(15166..16167)
DNA (1002bp) protein (334aa)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=311 evalue=4.1e-07)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=7 to=129 evalue=3.8e-06 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD1_55_20
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(16211..17002)
DNA (792bp) protein (264aa)
glycosyl transferase family protein
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=29 to=261 evalue=6.7e-41)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=17 to=235 evalue=2.6e-40)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=24 to=188 evalue=2.0e-30 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD1_55_21

Not on your lists

comp(17042..17479)
DNA (438bp) protein (146aa)
Holliday junction resolvase YqgF
UPF0081 (db=HMMPfam db_id=PF03652 from=15 to=141 evalue=1.4e-26 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=12 to=143 evalue=1.1e-21 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.140 from=12 to=140 evalue=6.6e-19 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
ACD1_55_22
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(17541..17921)
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=6 to=14)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=5.0)
ACD1_55_23
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18144..18908)
DNA (765bp) protein (255aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
met_pdase_I: methionine aminopeptidase, t (db=HMMTigr db_id=TIGR00500 from=3 to=254 evalue=9.2e-108 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
no description (db=Gene3D db_id=G3DSA:3.90.230.10 from=3 to=253 evalue=7.6e-78 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
Creatinase/aminopeptidase (db=superfamily db_id=SSF55920 from=2 to=253 evalue=4.9e-74 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
ACD1_55_24

Not on your lists

comp(19058..19705)
DNA (648bp) protein (216aa)
adk; adenylate kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=212 evalue=1.8e-54)
NUCLEOTIDE KINASE (db=HMMPanther db_id=PTHR23359 from=1 to=214 evalue=7.1e-50 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
ADENYLATE KINASE (db=HMMPanther db_id=PTHR23359:SF22 from=1 to=214 evalue=7.1e-50)
ACD1_55_25

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comp(19832..21124)
DNA (1293bp) protein (431aa)
preprotein translocase subunit SecY
preprotein translocase subunit SecY
Preprotein translocase subunit secY n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFE6_THET1 (db=UNIREF evalue=3.0e-123 bit_score=446.0 identity=53.58 coverage=97.9118329466357)
transmembrane_regions (db=TMHMM db_id=tmhmm from=312 to=334)
ACD1_55_26
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists


comp(21212..21649)
DNA (438bp) protein (146aa)
LSU ribosomal protein L15P
50S ribosomal protein L15 n=3 Tax=Clostridiales RepID=B0P2X9_9CLOT (db=UNIREF evalue=4.0e-17 bit_score=90.1 identity=52.94 coverage=66.4383561643836)
seg (db=Seg db_id=seg from=131 to=143)
seg (db=Seg db_id=seg from=7 to=25)
ACD1_55_27
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists


comp(21672..22196)
DNA (525bp) protein (175aa)
rpsE; 30S ribosomal protein S5
seg (db=Seg db_id=seg from=108 to=121)
seg (db=Seg db_id=seg from=44 to=64)
seg (db=Seg db_id=seg from=26 to=40)
ACD1_55_28
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists


comp(22227..22577)
DNA (351bp) protein (117aa)
50S ribosomal protein L18
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=6 to=116 evalue=1.6e-44 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translational machinery components (db=superfamily db_id=SSF53137 from=23 to=116 evalue=2.5e-30)
Ribosomal_L18p (db=HMMPfam db_id=PF00861 from=9 to=116 evalue=3.7e-29 interpro_id=IPR005484 interpro_description=Ribosomal protein L18/L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD1_55_29
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists


comp(22658..23194)
DNA (537bp) protein (179aa)
50S ribosomal protein L6
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=175 evalue=2.0e-81 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=2 to=178 evalue=4.4e-65 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=178 evalue=4.4e-65)
ACD1_55_30
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists


comp(23277..23681)
DNA (405bp) protein (135aa)
30S ribosomal protein S8
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=3 to=134 evalue=3.4e-46 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=2 to=134 evalue=2.1e-40 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=1 to=134 evalue=9.8e-39 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 96 in total

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