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ACD20_6

Alias: ACD20_25173.41887.13

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_6_1

Not on your lists

comp(100..345)
DNA (246bp) protein (82aa)
HTH_3 (db=HMMPfam db_id=PF01381 from=12 to=56 evalue=1.1e-11 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=66 evalue=5.7e-11 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=7 to=63 evalue=7.9e-09 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=4 to=67 evalue=2.7e-07)
ACD20_6_2

Not on your lists

955..1881
DNA (927bp) protein (309aa)
seg (db=Seg db_id=seg from=171 to=185)
seg (db=Seg db_id=seg from=235 to=272)
seg (db=Seg db_id=seg from=293 to=306)
TPR-like (db=superfamily db_id=SSF48452 from=27 to=95 evalue=3.8e-10)
ACD20_6_3

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1966..3267
DNA (1302bp) protein (434aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=130 to=141)
TPR-like (db=superfamily db_id=SSF48452 from=36 to=305 evalue=2.1e-17)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=21 to=298 evalue=2.4e-14 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
ACD20_6_4

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comp(3565..4200)
DNA (636bp) protein (212aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V3R1_9AQUI (db=UNIREF evalue=2.0e-65 bit_score=251.0 identity=60.29 coverage=94.811320754717)
ENDONUCLEASE_III_1 (db=PatternScan db_id=PS00764 from=190 to=206 evalue=0.0 interpro_id=IPR004035 interpro_description=Endonuclease III, iron-sulphur binding site GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III (db=HMMPanther db_id=PTHR10359 from=25 to=206 evalue=6.6e-76)
ACD20_6_5

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4535..5941
DNA (1407bp) protein (469aa)
Protein of unknown function DUF2233, periplasmic
Exopolysaccharide biosynthesis protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRE9_9FIRM (db=UNIREF evalue=3.0e-43 bit_score=180.0 identity=35.49 coverage=67.590618336887)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=30)
DUF2233 (db=HMMPfam db_id=PF09992 from=350 to=443 evalue=2.7e-12 interpro_id=IPR018711 interpro_description=Phosphodiester alpha-GlcNAcase)
ACD20_6_6

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6109..6282
DNA (174bp) protein (58aa)
6109..6282 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03806.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_6_7

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comp(6437..7012)
DNA (576bp) protein (192aa)
lemA1; protein LemA
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
coiled-coil (db=Coil db_id=coil from=125 to=146 evalue=NA)
LemA (db=HMMPfam db_id=PF04011 from=9 to=191 evalue=6.1e-64 interpro_id=IPR007156 interpro_description=LemA)
ACD20_6_8

Not on your lists

comp(7009..7743)
DNA (735bp) protein (245aa)
cytoplasmic protein
Uncharacterized protein {ECO:0000313|EMBL:EKE03808.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD20_C00006G00008,ACD20_25173.41887.13G0008,ACD20_25173.41887.13_8 id=17843 tax=ACD20 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_6_9

Not on your lists

comp(7737..8477)
DNA (741bp) protein (247aa)
beta-propeller domain-containing protein, methanol dehydrogenase
Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSZ0_9FIRM (db=UNIREF evalue=3.0e-35 bit_score=152.0 identity=50.31 coverage=63.1578947368421)
seg (db=Seg db_id=seg from=7 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=193 to=215)
ACD20_6_10

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8654..9349
DNA (696bp) protein (232aa)
CMP-N-acetylneuraminic acid synthetase
CMP-N-ACETYLNEURAMINIC ACID SYNTHASE (db=HMMPanther db_id=PTHR21485 from=8 to=231 evalue=2.0e-63)
CMP-N-ACETYLNEURAMINIC ACID SYNTHASE (db=HMMPanther db_id=PTHR21485:SF3 from=8 to=231 evalue=2.0e-63)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=227 evalue=1.3e-60)
ACD20_6_11

Not on your lists

9491..10000
DNA (510bp) protein (170aa)
seg (db=Seg db_id=seg from=96 to=114)
Uncharacterized protein {ECO:0000313|EMBL:EKE03811.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_6_12

Not on your lists

comp(10050..10241)
DNA (192bp) protein (64aa)
hypothetical protein
hypothetical protein alias=ACD20_25173.41887.13G0012,ACD20_25173.41887.13_12,ACD20_C00006G00012 id=17829 tax=ACD20 species=Fervidobacterium nodosum genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE03812.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_6_13

Not on your lists

comp(10244..11119)
DNA (876bp) protein (292aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NKG0_9DELT (db=UNIREF evalue=8.0e-86 bit_score=320.0 identity=55.48 coverage=97.6027397260274)
seg (db=Seg db_id=seg from=157 to=173)
Uncharacterized protein {ECO:0000313|EMBL:EKE03813.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_6_14

Not on your lists

11444..14146
DNA (2703bp) protein (901aa)
glycogen debranching protein
Putative uncharacterized protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZLD9_NODSP (db=UNIREF evalue=2.0e-106 bit_score=390.0 identity=35.86 coverage=73.3629300776915)
seg (db=Seg db_id=seg from=880 to=895)
Six-hairpin glycosidases (db=superfamily db_id=SSF48208 from=396 to=896 evalue=1.6e-63 interpro_id=IPR008928 interpro_description=Six-hairpin glycosidase-like GO=Molecular Function: catalytic activity (GO:0003824))
ACD20_6_15

Not on your lists

comp(14300..14812)
DNA (513bp) protein (171aa)
AMMECR1 domain-containing protein
AMMECR1-like (db=superfamily db_id=SSF143447 from=2 to=170 evalue=1.2e-37)
AMMECR1 (db=HMMPfam db_id=PF01871 from=5 to=167 evalue=1.1e-34 interpro_id=IPR002733 interpro_description=AMMECR1)
no description (db=Gene3D db_id=G3DSA:3.30.700.20 from=6 to=127 evalue=5.9e-28)
ACD20_6_16

Not on your lists

comp(14966..15757)
DNA (792bp) protein (264aa)
AMMECR1 domain-containing protein
LigB subunit of an aromatic-ring-opening dioxygenase LigAB (db=superfamily db_id=SSF53213 from=2 to=263 evalue=3.4e-26 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
LigB (db=HMMPfam db_id=PF02900 from=10 to=259 evalue=2.7e-24 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
hypothetical protein alias=ACD20_25173.41887.13G0016,ACD20_25173.41887.13_16,ACD20_C00006G00016 id=17833 tax=ACD20 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_6_17

Not on your lists

comp(15761..17080)
DNA (1320bp) protein (440aa)
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
FAD dependent oxidoreductase domain protein n=1 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7R6A7_9THEO (db=UNIREF evalue=6.0e-80 bit_score=301.0 identity=42.17 coverage=84.5454545454545)
seg (db=Seg db_id=seg from=7 to=21)
has signal peptide. 4.90 cytoplasmic membrane, 2.5 extracellular. kelly wrighton (11/15/12)
ACD20_6_18

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17190..17459
DNA (270bp) protein (90aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=86)
UPF0016 (db=HMMPfam db_id=PF01169 from=6 to=81 evalue=3.2e-24 interpro_id=IPR001727 interpro_description=Uncharacterised protein family UPF0016 GO=Cellular Component: membrane (GO:0016020))
ACD20_6_19

Not on your lists

17595..18722
DNA (1128bp) protein (376aa)
periplasmic serine proteinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
SERINE PROTEASE FAMILY S1C HTRA-RELATED (db=HMMPanther db_id=PTHR22939 from=41 to=370 evalue=6.5e-107)
SERINE PROTEASE DO/HTRA-RELATED (db=HMMPanther db_id=PTHR22939:SF10 from=41 to=370 evalue=6.5e-107)
ACD20_6_20

Not on your lists

18962..19948
DNA (987bp) protein (329aa)
patatin
patatin
Patatin n=1 Tax=Thermincola sp. JR RepID=D5X9C5_9FIRM (db=UNIREF evalue=7.0e-84 bit_score=314.0 identity=51.82 coverage=98.1762917933131)
coiled-coil (db=Coil db_id=coil from=301 to=322 evalue=NA)
ACD20_6_21

Not on your lists

20391..20642
DNA (252bp) protein (84aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
seg (db=Seg db_id=seg from=66 to=83)
ACD20_6_22

Not on your lists

20672..21019
DNA (348bp) protein (116aa)
seg (db=Seg db_id=seg from=3 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=110)
ACD20_6_23

Not on your lists

comp(21664..22068)
DNA (405bp) protein (135aa)
CheY-like (db=superfamily db_id=SSF52172 from=2 to=113 evalue=3.4e-10 interpro_id=IPR011006 interpro_description=CheY-like)
Response_reg (db=HMMPfam db_id=PF00072 from=7 to=110 evalue=2.0e-09 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=1 to=132 evalue=4.6e-06)
SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) (db=HMMPanther db_id=PTHR23283:SF47 from=6 to=102 evalue=5.8e-05)
ACD20_6_24

Not on your lists

22198..22335
DNA (138bp) protein (46aa)
seg (db=Seg db_id=seg from=11 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE03789.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_6_25

Not on your lists

22340..22447
DNA (108bp) protein (36aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKE03790.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_6_26

Not on your lists

comp(22468..23409)
DNA (942bp) protein (314aa)
Dihydropteroate synthase DHPS n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GLX9_9DELT (db=UNIREF evalue=3.0e-49 bit_score=199.0 identity=41.49 coverage=75.4777070063694)
5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase
Dihydropteroate synthetase-like (db=superfamily db_id=SSF51717 from=1 to=267 evalue=2.9e-57 interpro_id=IPR011005 interpro_description=Dihydropteroate synthase-like GO=Biological Process: cellular metabolic process (GO:0044237))
no description (db=Gene3D db_id=G3DSA:3.20.20.20 from=1 to=267 evalue=9.7e-55 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine and derivative metabolic process (GO:0042558))
ACD20_6_27

Not on your lists

comp(23470..24312)
DNA (843bp) protein (281aa)
5, 10-methylenetetrahydrofolate dehydrogenase (NADP+), methenyltetrahydrofolate cyclohydrolase
5, 10-methylenetetrahydrofolate dehydrogenase (NADP+), methenyltetrahydrofolate cyclohydrolase
Bifunctional protein folD n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PGI7_9PROT (db=UNIREF evalue=7.0e-90 bit_score=333.0 identity=58.42 coverage=97.864768683274)
coiled-coil (db=Coil db_id=coil from=64 to=85 evalue=NA)
ACD20_6_28

Not on your lists

comp(24323..25072)
DNA (750bp) protein (250aa)
Cobyrinic acid ac-diamide synthase
Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8W3_9CLOT (db=UNIREF evalue=1.0e-23 bit_score=113.0 identity=30.94 coverage=87.2)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=244 evalue=4.1e-29)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=244 evalue=2.3e-16)
ACD20_6_29

Not on your lists

comp(25083..26162)
DNA (1080bp) protein (360aa)
hypothetical protein
seg (db=Seg db_id=seg from=210 to=220)
UROD/MetE-like (db=superfamily db_id=SSF51726 from=46 to=356 evalue=9.1e-19)
hypothetical protein, methionine synthase II-like protein alias=ACD20_25173.41887.13G0029,ACD20_25173.41887.13_29,ACD20_C00006G00029 id=17813 tax=ACD20 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Could be involved in red Acetyl CoA pathway (another enzyme with this annotation had alternative annotation) Jill Banfield (11/15/12)
ACD20_6_30

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26306..26722
DNA (417bp) protein (139aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=71 evalue=5.9e-08 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=6 to=69 evalue=0.00016)
Uncharacterized protein {ECO:0000313|EMBL:EKE03795.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 46 in total

View Taxonomy