ggKbase home page

ACD21_14

Alias: ACD21_11131.14921.13

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD21_14_1

Not on your lists

898..1353
DNA (456bp) protein (152aa)
Serine hydroxymethyltransferase n=1 Tax=Shewanella loihica PV-4 RepID=GLYA_SHELP (db=UNIREF evalue=2.0e-60 bit_score=234.0 identity=71.14 coverage=97.3684210526316)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
SERINE HYDROXYMETHYLTRANSFERASE (db=HMMPanther db_id=PTHR11680 from=1 to=149 evalue=5.4e-57 interpro_id=IPR001085 interpro_description=Serine hydroxymethyltransferase GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563))
no description (db=Gene3D db_id=G3DSA:3.90.1150.10 from=1 to=149 evalue=1.2e-56 interpro_id=IPR015422 interpro_description=Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACD21_14_2

Not on your lists

1560..1844
DNA (285bp) protein (95aa)
nrdR; transcriptional regulator NrdR
ATP-cone (db=HMMPfam db_id=PF03477 from=2 to=80 evalue=1.9e-13 interpro_id=IPR005144 interpro_description=ATP-cone)
ATP_CONE (db=ProfileScan db_id=PS51161 from=1 to=83 evalue=19.994 interpro_id=IPR005144 interpro_description=ATP-cone)
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_14_3

Not on your lists

1868..2296
DNA (429bp) protein (143aa)
nusB; transcriptional terminator nusB
nusB: transcription antitermination factor N (db=HMMTigr db_id=TIGR01951 from=5 to=134 evalue=8.1e-64 interpro_id=IPR011605 interpro_description=NusB antitermination factor GO=Molecular Function: transcription termination factor activity (GO:0003715), Biological Process: transcription termination (GO:0006353))
NusB-like (db=superfamily db_id=SSF48013 from=5 to=130 evalue=5.7e-41 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.940.10 from=1 to=139 evalue=2.7e-39 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD21_14_4

Not on your lists

2310..4139
DNA (1830bp) protein (610aa)
hypothetical protein
seg (db=Seg db_id=seg from=493 to=503)
transmembrane_regions (db=TMHMM db_id=tmhmm from=293 to=315)
transmembrane_regions (db=TMHMM db_id=tmhmm from=335 to=354)
ACD21_14_5

Not on your lists

4141..4956
DNA (816bp) protein (272aa)
methyltransferase-like protein
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=194 evalue=3.9e-25)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=2 to=200 evalue=1.2e-22)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=40 to=129 evalue=1.5e-11 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
ACD21_14_6

Not on your lists

4981..5304
DNA (324bp) protein (108aa)
GDP-mannose 4,6-dehydratase n=1 Tax=Helicobacter mustelae 12198 RepID=D3UJ97_HELM1 (db=UNIREF evalue=2.0e-15 bit_score=84.7 identity=53.62 coverage=62.962962962963)
GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP MANNOSE-4,6-DEHYDRATASE (db=HMMPanther db_id=PTHR10366:SF32 from=8 to=91 evalue=3.1e-21 interpro_id=IPR006368 interpro_description=GDP-mannose 4,6-dehydratase GO=Cellular Component: intracellular (GO:0005622), Molecular Function: GDP-mannose 4,6-dehydratase activity (GO:0008446), Biological Process: GDP-mannose metabolic process (GO:0019673))
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=8 to=91 evalue=3.1e-21)
ACD21_14_7

Not on your lists

5311..6024
DNA (714bp) protein (238aa)
family 2 glycosyltransferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=215 evalue=3.3e-39)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=12 to=188 evalue=9.0e-28)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=7 to=168 evalue=1.8e-23 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD21_14_8

Not on your lists

6017..7252
DNA (1236bp) protein (412aa)
NDP-hexose 3-C-methyltransferase TylCIII
NDP-hexose 3-C-methyltransferase TylCIII
NDP-hexose 3-C-methyltransferase TylCIII n=1 Tax=Polaromonas sp. JS666 RepID=Q125A7_POLSJ (db=UNIREF evalue=8.0e-136 bit_score=487.0 identity=59.71 coverage=97.5728155339806)
seg (db=Seg db_id=seg from=273 to=288)
ACD21_14_9

Not on your lists

7267..7905
DNA (639bp) protein (213aa)
seg (db=Seg db_id=seg from=91 to=100)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=189 evalue=4.0e-11 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
ACD21_14_10

Not on your lists

7898..8986
DNA (1089bp) protein (363aa)
Spore coat polysaccharide biosynthesis protein; SpsC n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUF9_9BRAD (db=UNIREF evalue=5.0e-100 bit_score=368.0 identity=47.52 coverage=93.3884297520661)
arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ArnB (EC:2.6.1.-)
arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ArnB (EC:2.6.1.-)
coiled-coil (db=Coil db_id=coil from=238 to=259 evalue=NA)
ACD21_14_11

Not on your lists

8993..9922
DNA (930bp) protein (310aa)
hypothetical membrane spanning protein
Hypothetical membrane spanning protein n=4 Tax=Coxiella burnetii RepID=A9KFK4_COXBN (db=UNIREF evalue=2.0e-34 bit_score=150.0 identity=33.79 coverage=93.2258064516129)
transmembrane_regions (db=TMHMM db_id=tmhmm from=240 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=282 to=304)
ACD21_14_12

Not on your lists

9998..10879
DNA (882bp) protein (294aa)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q094Y1_STIAU (db=UNIREF evalue=9.0e-116 bit_score=419.0 identity=66.55 coverage=98.2993197278912)
rfbA; glucose-1-phosphate thymidylyltransferase
rfbA; glucose-1-phosphate thymidylyltransferase
rmlA: glucose-1-phosphate thymidylyltransfer (db=HMMTigr db_id=TIGR01207 from=2 to=287 evalue=2.2e-174 interpro_id=IPR005907 interpro_description=Glucose-1-phosphate thymidylyltransferase, long form GO=Molecular Function: glucose-1-phosphate thymidylyltransferase activity (GO:0008879), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
ACD21_14_13

Not on your lists

10866..11885
DNA (1020bp) protein (340aa)
dTDP-glucose 4,6-dehydratase
dTDP-glucose 4,6-dehydratase
dTDP-glucose 4,6-dehydratase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F315_9PROT (db=UNIREF evalue=3.0e-112 bit_score=408.0 identity=56.99 coverage=97.9411764705882)
seg (db=Seg db_id=seg from=158 to=173)
ACD21_14_14

Not on your lists

11937..12686
DNA (750bp) protein (250aa)
comL; competence lipoprotein ComL
OM_YfiO: outer membrane assembly lipoprotein (db=HMMTigr db_id=TIGR03302 from=3 to=249 evalue=4.7e-90 interpro_id=IPR017689 interpro_description=Outer membrane assembly lipoprotein YfiO)
TPR-like (db=superfamily db_id=SSF48452 from=24 to=124 evalue=8.5e-08)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=5.0)
ACD21_14_15

Not on your lists

12955..13338
DNA (384bp) protein (128aa)
LuxR family regulatory protein
Bacterial regulatory protein, luxR family n=5 Tax=Coxiella burnetii RepID=B6J9A5_COXB1 (db=UNIREF evalue=9.0e-10 bit_score=65.9 identity=37.62 coverage=75.0)
GerE (db=HMMPfam db_id=PF00196 from=60 to=113 evalue=5.0e-14 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=38 to=124 evalue=3.6e-13 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: r
ACD21_14_16

Not on your lists

13768..14958
DNA (1191bp) protein (397aa)
hypothetical protein
seg (db=Seg db_id=seg from=362 to=395)
seg (db=Seg db_id=seg from=263 to=270)
DUF3442 (db=HMMPfam db_id=PF11924 from=119 to=258 evalue=3.4e-18)
Displaying 16 items

View Taxonomy