ggKbase home page

ACD21_96

Alias: ACD21_52367.11184.14

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD21_96_1

Not on your lists

comp(1..192)
DNA (192bp) protein (64aa)
protein TraU
TraU (db=HMMPfam db_id=PF06834 from=23 to=64 evalue=1.1e-15 interpro_id=IPR009649 interpro_description=TraU)
Uncharacterized protein {ECO:0000313|EMBL:EKE00998.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative sex pilus assembly and synthesis protein (TraU) [Photobacterium profundum SS9] n=1 Tax=Photobacterium profundum RepID=Q6LW86_PHOPR
ACD21_96_2

Not on your lists

comp(216..1175)
DNA (960bp) protein (320aa)
(Phosphotyrosine protein) phosphatases II (db=superfamily db_id=SSF52799 from=99 to=306 evalue=4.9e-19)
Y_phosphatase (db=HMMPfam db_id=PF00102 from=85 to=294 evalue=1.5e-11 interpro_id=IPR000242 interpro_description=Protein-tyrosine phosphatase, receptor/non-receptor type GO=Molecular Function: protein tyrosine phosphatase activity (GO:0004725), Biological Process: protein amino acid dephosphorylation (GO:0006470))
no description (db=Gene3D db_id=G3DSA:3.90.190.10 from=81 to=297 evalue=4.4e-10)
PROTEIN-TYROSINE PHOSPHATASE (db=HMMPanther db_id=PTHR19134 from=145 to=297 evalue=2.3e-05)
ACD21_96_3

Not on your lists

comp(1204..1674)
DNA (471bp) protein (157aa)
hypothetical protein
JAB1/MPN domain (db=superfamily db_id=SSF102712 from=4 to=153 evalue=1.5e-12)
Uncharacterized protein {ECO:0000313|EMBL:EKE01000.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2AF60_9FIRM
ACD21_96_4

Not on your lists

comp(1717..2259)
DNA (543bp) protein (181aa)
chromate transport protein ChrA
transmembrane_regions (db=TMHMM db_id=tmhmm from=137 to=159)
transmembrane_regions (db=TMHMM db_id=tmhmm from=111 to=133)
seg (db=Seg db_id=seg from=166 to=180)
ACD21_96_5

Not on your lists

comp(2241..2813)
DNA (573bp) protein (191aa)
chromate transport protein ChrA
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD21_96_6

Not on your lists

comp(2800..3573)
DNA (774bp) protein (258aa)
hypothetical protein
seg (db=Seg db_id=seg from=191 to=202)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
Activating enzymes of the ubiquitin-like proteins (db=superfamily db_id=SSF69572 from=6 to=251 evalue=1.2e-93 interpro_id=IPR009036 interpro_description=Molybdenum cofactor biosynthesis, MoeB)
ACD21_96_7

Not on your lists

comp(3576..3872)
DNA (297bp) protein (99aa)
3576..3872 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE01004.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_96_8

Not on your lists

comp(3928..4812)
DNA (885bp) protein (295aa)
hypothetical protein
C-type lectin-like (db=superfamily db_id=SSF56436 from=78 to=292 evalue=3.2e-59 interpro_id=IPR016187 interpro_description=C-type lectin fold GO=Molecular Function: binding (GO:0005488))
no description (db=Gene3D db_id=G3DSA:3.90.1580.10 from=82 to=290 evalue=3.3e-55 interpro_id=IPR005532 interpro_description=Sulphatase-modifying factor)
FGE-sulfatase (db=HMMPfam db_id=PF03781 from=139 to=291 evalue=7.5e-42 interpro_id=IPR005532 interpro_description=Sulphatase-modifying factor)
ACD21_96_9

Not on your lists

comp(4893..5552)
DNA (660bp) protein (220aa)
Type IV conjugative transfer system protein TraW n=2 Tax=Enterobacter cloacae subsp. cloacae RepID=D5CKL5_ENTCC (db=UNIREF evalue=4.0e-48 bit_score=194.0 identity=44.5 coverage=86.3636363636364)
type IV conjugative transfer system protein TraW
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
TraW: type-F conjugative transfer system pro (db=HMMTigr db_id=TIGR02743 from=15 to=213 evalue=1.3e-82 interpro_id=IPR014114 interpro_description=Type-F conjugative transfer system protein TraW)
ACD21_96_10

Not on your lists

comp(5539..6360)
DNA (822bp) protein (274aa)
conjugal transfer protein TraC
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=171 evalue=1.2e-16)
Protein TraC {ECO:0000313|EMBL:EKE01007.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Type-IV secretion system protein TraC n=2 Tax=Citrobacter RepID=J0VII6_9ENTR
ACD21_96_11

Not on your lists

comp(8371..8829)
DNA (459bp) protein (153aa)
putative Type IV conjugative transfer system protein TraV
Conjugative transfer: assembly n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTS3_LEGPH (db=UNIREF evalue=1.0e-12 bit_score=75.5 identity=32.03 coverage=74.5098039215686)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
TraV (db=HMMPfam db_id=PF09676 from=37 to=142 evalue=5.9e-22 interpro_id=IPR014118 interpro_description=Type IV secretion system, TraV)
ACD21_96_12

Not on your lists

comp(8826..9917)
DNA (1092bp) protein (364aa)
traB; conjugative transfer protein TraB
Putative conjugative transfer protein TraB n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L094_9GAMM (db=UNIREF evalue=4.0e-48 bit_score=196.0 identity=48.08 coverage=56.043956043956)
coiled-coil (db=Coil db_id=coil from=1 to=22 evalue=NA)
seg (db=Seg db_id=seg from=75 to=95)
ACD21_96_13

Not on your lists

comp(10275..10550)
DNA (276bp) protein (92aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
seg (db=Seg db_id=seg from=27 to=49)
Uncharacterized protein {ECO:0000313|EMBL:EKE00994.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_96_14

Not on your lists

comp(10554..11222)
DNA (669bp) protein (223aa)
IncF plasmid conjugative transfer pilus assembly protein TraK n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z4T4_LISDA (db=UNIREF evalue=5.0e-27 bit_score=124.0 identity=36.74 coverage=90.1345291479821)
type-F conjugative transfer system secretin TraK
seg (db=Seg db_id=seg from=147 to=160)
TraK (db=HMMPfam db_id=PF06586 from=19 to=216 evalue=1.6e-49 interpro_id=IPR010563 interpro_description=TraK)
Displaying 14 items

View Taxonomy