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ACD23_493

Alias: ACD23_5792.3071.26

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD23_493_1
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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54..674
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=3 Tax=Comamonadaceae RepID=RL4_RHOFD (db=UNIREF evalue=4.0e-108 bit_score=393.0 identity=90.78 coverage=99.0338164251208)
rplD; 50S ribosomal protein L4
rplD; 50S ribosomal protein L4
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=205 evalue=2.5e-69 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD23_493_2
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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671..997
DNA (327bp) protein (109aa)
50S ribosomal protein L23 n=2 Tax=Comamonadaceae RepID=RL23_RHOFD (db=UNIREF evalue=1.0e-48 bit_score=195.0 identity=90.74 coverage=98.1651376146789)
rplW; 50S ribosomal protein L23
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=12 to=108 evalue=6.1e-27 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=12 to=108 evalue=1.5e-25 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD23_493_3

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comp(994..1182)
DNA (189bp) protein (63aa)
seg (db=Seg db_id=seg from=2 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
Uncharacterized protein {ECO:0000313|EMBL:EKD97377.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD23_493_4

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1396..1872
DNA (477bp) protein (159aa)
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=1 Tax=Rhodoferax ferrireducens T118 RepID=RL2_RHOFD (db=UNIREF evalue=1.0e-75 bit_score=284.0 identity=94.94 coverage=98.7421383647799)
seg (db=Seg db_id=seg from=117 to=126)
RIBOSOMAL_L2 (db=PatternScan db_id=PS00467 from=102 to=113 evalue=0.0 interpro_id=IPR022671 interpro_description=Ribosomal protein L2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD23_493_5

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1884..2162
DNA (279bp) protein (93aa)
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 n=12 Tax=Burkholderiales RepID=RS19_ACIAC (db=UNIREF evalue=2.0e-44 bit_score=181.0 identity=94.57 coverage=97.8494623655914)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=91 evalue=3.7e-62 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD23_493_6
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3007..3123
DNA (117bp) protein (39aa)
30S ribosomal protein S3 n=2 Tax=Polaromonas RepID=RS3_POLSJ (db=UNIREF evalue=6.0e-15 bit_score=83.2 identity=100.0 coverage=97.4358974358974)
rpsC; 30S ribosomal protein S3
30S/40S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760 from=2 to=39 evalue=2.2e-13)
CHLOROPLAST 30S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760:SF10 from=2 to=39 evalue=2.2e-13)
Displaying 6 items

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