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ACD23_448_1

Organism: ACD23

partial RP 23 / 55 MC: 9 BSCG 17 / 51 MC: 2 ASCG 0 / 38
Location: 1..126

Top 3 Functional Annotations

Value Algorithm Source
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 41.0
  • Bit_score: 83
  • Evalue 1.70e-14
DNA-directed RNA polymerase subunit omega n=4 Tax=Acidovorax RepID=RPOZ_ACIAC (db=UNIREF evalue=1.0e-14 bit_score=81.6 identity=95.12 coverage=95.2380952380952) similarity UNIREF
DB: UNIREF
  • Identity: 95.12
  • Coverage: 95.24
  • Bit_score: 81
  • Evalue 1.00e-14
RNA_pol_Rpb6 (db=HMMPfam db_id=PF01192 from=1 to=34 evalue=1.8e-05 interpro_id=IPR006110 interpro_description=RNA polymerase Rpb6 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.80e-05

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Notes

rpoB detected but too short for phylogenetic analyses kelly wrighton (11/15/12)

Taxonomy

Acidovorax sp. KKS102 → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 126
GCCCGCATGCTGAGCCAGGGTCACGCCCCGCGCATCGAGAGCCGCAACAAGCCCGCCGTGACCGCCCTGCGCGAAATCGCCGAAGGCAAGGTTGGCCTGGAAATGCTCAAGAAGGTTCCCGGTTGA
PROTEIN sequence
Length: 42
ARMLSQGHAPRIESRNKPAVTALREIAEGKVGLEMLKKVPG*