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ACD24_72

Alias: ACD24_2813.7858.20

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD24_72_1
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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3..581
DNA (579bp) protein (193aa)
hypothetical protein
ABC superfamily ATP binding cassette transporter, ABC protein n=2 Tax=Selenomonas RepID=C4V5Q9_9FIRM (db=UNIREF evalue=5.0e-47 bit_score=190.0 identity=50.0 coverage=93.7823834196891)
seg (db=Seg db_id=seg from=27 to=38)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=96 to=110 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ACD24_72_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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550..1437
DNA (888bp) protein (296aa)
hypothetical protein
Cell division protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCY6_9FIRM (db=UNIREF evalue=3.0e-25 bit_score=119.0 identity=30.7 coverage=71.9594594594595)
seg (db=Seg db_id=seg from=225 to=237)
transmembrane_regions (db=TMHMM db_id=tmhmm from=262 to=284)
ACD24_72_3
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

1491..2756
DNA (1266bp) protein (422aa)
hypothetical protein
seg (db=Seg db_id=seg from=7 to=18)
coiled-coil (db=Coil db_id=coil from=43 to=71 evalue=NA)
coiled-coil (db=Coil db_id=coil from=85 to=113 evalue=NA)
ACD24_72_4
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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2848..3330
DNA (483bp) protein (161aa)
seg (db=Seg db_id=seg from=9 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg 9..23 Tax=RBG_16_WWE3_37_10_curated
ACD24_72_5
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

3365..3736
DNA (372bp) protein (124aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
VanZ (db=HMMPfam db_id=PF04892 from=19 to=106 evalue=1.2e-10 interpro_id=IPR006976 interpro_description=VanZ-like)
ACD24_72_6
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

3682..4113
DNA (432bp) protein (144aa)
Nucleotide-binding protein
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=143 evalue=1.3e-30)
UPF0079 (db=HMMPfam db_id=PF02367 from=11 to=136 evalue=3.7e-29 interpro_id=IPR003442 interpro_description=Uncharacterised protein family UPF0079, ATPase bacteria)
HI0065_YjeE: ATPase, YjeE family (db=HMMTigr db_id=TIGR00150 from=3 to=143 evalue=3.7e-18 interpro_id=IPR003442 interpro_description=Uncharacterised protein family UPF0079, ATPase bacteria)
ACD24_72_7
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

4094..4447
DNA (354bp) protein (118aa)
Peptidase_M22 (db=HMMPfam db_id=PF00814 from=44 to=96 evalue=5.0e-05 interpro_id=IPR000905 interpro_description=Peptidase M22, glycoprotease GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
Peptidase_M22 44..96 Tax=RBG_16_WWE3_37_10_curated
ACD24_72_8

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4479..5558
DNA (1080bp) protein (360aa)
NAD-dependent epimerase/dehydratase
seg (db=Seg db_id=seg from=158 to=161)
seg (db=Seg db_id=seg from=303 to=319)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=359 evalue=2.7e-84)
ACD24_72_9
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

5581..6552
DNA (972bp) protein (324aa)
glycosyl transferase family protein
seg (db=Seg db_id=seg from=220 to=230)
seg (db=Seg db_id=seg from=293 to=303)
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=266)
ACD24_72_10
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

6549..6950
DNA (402bp) protein (134aa)
seg (db=Seg db_id=seg from=56 to=70)
CheY-like (db=superfamily db_id=SSF52172 from=6 to=131 evalue=4.7e-24 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=11 to=133 evalue=1.2e-20)
Response_reg (db=HMMPfam db_id=PF00072 from=14 to=115 evalue=3.6e-17 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD24_72_11
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

comp(6951..7334)
DNA (384bp) protein (128aa)
Two component transcriptional regulator, winged helix
Two component transcriptional regulator, winged helix family protein n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z9V6_9SYNE (db=UNIREF evalue=2.0e-13 bit_score=77.8 identity=32.23 coverage=92.1875)
CheY-like (db=superfamily db_id=SSF52172 from=2 to=124 evalue=5.8e-22 interpro_id=IPR011006 interpro_description=CheY-like)
Response_reg (db=HMMPfam db_id=PF00072 from=7 to=119 evalue=1.6e-18 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD24_72_12
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

comp(7343..7714)
DNA (372bp) protein (124aa)
response regulator receiver domain protein
CheY-like (db=superfamily db_id=SSF52172 from=1 to=122 evalue=1.7e-27 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=2 to=121 evalue=2.1e-23)
no description (db=HMMSmart db_id=SM00448 from=3 to=117 evalue=2.7e-23 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD24_72_13
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

comp(7726..7896)
DNA (171bp) protein (57aa)
7726..7896 - (rbs_motif=None rbs_spacer=None)
response regulator receiver protein Tax=RBG_16_WWE3_37_10_curated
Displaying 13 items

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