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ACD29_128

Alias: ACD29_248338.6739.6

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD29_128_1
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..554)
-----------------
DNA (552bp)
protein (184aa)
Arginase n=2 Tax=Nitrosococcus oceani RepID=Q3JAG2_NITOC (db=UNIREF evalue=3.0e-36 bit_score=154.0 identity=47.13 coverage=91.8478260869565)
arginase (EC:3.5.3.1)
ARGINASE 1, 2 (db=HMMPanther db_id=PTHR11358:SF2 from=36 to=184 evalue=7.4e-38 interpro_id=IPR014033 interpro_description=Arginase, subgroup GO=Molecular Function: arginase activity (GO:0004053), Biological Process: arginine metabolic process (GO:0006525), Molecular Function: metal ion binding (GO:0046872))
ARGINASE/AGMATINASE-RELATED (db=HMMPanther db_id=PTHR11358 from=36 to=184 evalue=7.4e-38 interpro_id=IPR006035 interpro_description=Ureohydrolase GO=Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813), Molecular Function: metal ion binding (GO:0046872))
ACD29_128_2
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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622..1107
-----------------
DNA (486bp)
protein (162aa)
622..1107 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_38_11_curated
ACD29_128_3
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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1161..1643
-----------------
DNA (483bp)
protein (161aa)
Poly(A) polymerase n=6 Tax=Coxiella burnetii RepID=A9NB21_COXBR (db=UNIREF evalue=4.0e-40 bit_score=166.0 identity=63.2 coverage=73.9130434782609)
pcnB; poly(A) polymerase (EC:2.7.7.19)
seg (db=Seg db_id=seg from=143 to=156)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=23 to=137 evalue=2.7e-22)
ACD29_128_4
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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1708..2484
-----------------
DNA (777bp)
protein (259aa)
pcnB; poly(A) polymerase (EC:2.7.7.19)
Poly(A) polymerase n=6 Tax=Coxiella burnetii RepID=A9NB21_COXBR (db=UNIREF evalue=5.0e-54 bit_score=214.0 identity=43.75 coverage=98.4555984555985)
seg (db=Seg db_id=seg from=25 to=34)
Poly A polymerase C-terminal region-like (db=superfamily db_id=SSF81891 from=8 to=219 evalue=4.2e-43)
ACD29_128_5
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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2472..2963
-----------------
DNA (492bp)
protein (164aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=2 Tax=Serratia RepID=A8GIZ3_SERP5 (db=UNIREF evalue=1.0e-40 bit_score=168.0 identity=54.9 coverage=92.0731707317073)
seg (db=Seg db_id=seg from=63 to=76)
folK: 2-amino-4-hydroxy-6-hydroxymethyldihyd (db=HMMTigr db_id=TIGR01498 from=5 to=134 evalue=1.6e-56 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD29_128_6
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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2960..3439
-----------------
DNA (480bp)
protein (160aa)
Phosphopantetheine adenylyltransferase n=2 Tax=Actinobacillus minor RepID=B9CXL6_9PAST (db=UNIREF evalue=5.0e-38 bit_score=159.0 identity=50.66 coverage=93.75)
phosphopantetheine adenylyltransferase (EC:2.7.7.3)
coaD_prev_kdtB: pantetheine-phosphate (db=HMMTigr db_id=TIGR01510 from=4 to=159 evalue=9.0e-59 interpro_id=IPR001980 interpro_description=Coenzyme A biosynthesis protein GO=Molecular Function: pantetheine-phosphate adenylyltransferase activity (GO:0004595), Biological Process: coenzyme A biosynthetic process (GO:0015937))
PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE (db=HMMPanther db_id=PTHR21342 from=2 to=159 evalue=7.1e-58)
ACD29_128_7
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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3441..3683
-----------------
DNA (243bp)
protein (81aa)
ferredoxin
Ferredoxin n=6 Tax=Coxiella burnetii RepID=A9KGS9_COXBN (db=UNIREF evalue=1.0e-28 bit_score=128.0 identity=77.92 coverage=93.8271604938272)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=9 to=20 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=2 to=79 evalue=5.4e-22)
ACD29_128_8
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3730..3942)
-----------------
DNA (213bp)
protein (71aa)
rpmG; LSU ribosomal protein L33P
LSU ribosomal protein L33P n=6 Tax=Coxiella burnetii RepID=A9KGS8_COXBN (db=UNIREF evalue=6.0e-14 bit_score=79.7 identity=63.24 coverage=92.9577464788732)
Ribosomal_L33 (db=HMMPfam db_id=PF00471 from=7 to=67 evalue=1.4e-08 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=56 evalue=0.0026 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD29_128_9
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3945..4172)
-----------------
DNA (228bp)
protein (76aa)
50S ribosomal protein L28 n=6 Tax=Coxiella burnetii RepID=RL28_COXB1 (db=UNIREF evalue=3.0e-21 bit_score=103.0 identity=64.38 coverage=94.7368421052632)
rpmB; 50S ribosomal protein L28
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=63 evalue=1.5e-27 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28: ribosomal protein L28 (db=HMMTigr db_id=TIGR00009 from=1 to=58 evalue=1.3e-25 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD29_128_10
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4317..4775
-----------------
DNA (459bp)
protein (153aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=6 Tax=Coxiella burnetii RepID=DUT_COXBR (db=UNIREF evalue=2.0e-60 bit_score=233.0 identity=71.71 coverage=98.6928104575163)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
dut: dUTP diphosphatase (db=HMMTigr db_id=TIGR00576 from=8 to=151 evalue=2.7e-69 interpro_id=IPR008181 interpro_description=DeoxyUTP pyrophosphatase domain, subfamily 1, GO=Molecular Function: dUTP diphosphatase activity (GO:0004170), Biological Process: dUTP metabolic process (GO:0046080))
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=152 evalue=6.1e-55)
ACD29_128_11
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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5976..6203
-----------------
DNA (228bp)
protein (76aa)
Phosphomannomutase n=6 Tax=Coxiella burnetii RepID=A9KGS4_COXBN (db=UNIREF evalue=7.0e-22 bit_score=106.0 identity=66.67 coverage=97.3684210526316)
algC; phosphoglucomutase (EC:5.4.2.8 5.4.2.2)
no description (db=Gene3D db_id=G3DSA:3.30.310.50 from=1 to=75 evalue=1.1e-19)
Phosphoglucomutase, C-terminal domain (db=superfamily db_id=SSF55957 from=1 to=75 evalue=7.8e-18)
ACD29_128_12

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comp(6219..6773)
-----------------
DNA (555bp)
protein (185aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=92)
seg (db=Seg db_id=seg from=155 to=164)
seg (db=Seg db_id=seg from=70 to=102)
Displaying 12 items

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