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ACD34_38

Alias: ACD34_63456.18421.12

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD34_38_1

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comp(3..218)
DNA (216bp) protein (72aa)
seg (db=Seg db_id=seg from=3 to=19)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=69 evalue=7.2e-14)
CbiA (db=HMMPfam db_id=PF01656 from=4 to=51 evalue=5.7e-12 interpro_id=IPR002586 interpro_description=Cobyrinic acid a,c-diamide synthase)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=69 evalue=5.1e-09)
ACD34_38_2

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1415..2731
DNA (1317bp) protein (439aa)
hypothetical protein
hypothetical protein
Uncharacterized conserved protein UCP033563 n=3 Tax=Clostridium thermocellum RepID=A3DKB2_CLOTH (db=UNIREF evalue=4.0e-125 bit_score=452.0 identity=49.66 coverage=99.0888382687927)
DUF1015 (db=HMMPfam db_id=PF06245 from=10 to=433 evalue=5.8e-59 interpro_id=IPR008323 interpro_description=Uncharacterised conserved protein UCP033563)
ACD34_38_3

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2746..3054
DNA (309bp) protein (103aa)
2746..3054 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD88722.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD34_38_4
unknown

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3180..3437
DNA (258bp) protein (86aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=69 to=80)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=29 evalue=5.0)
ACD34_38_5

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3449..4957
DNA (1509bp) protein (503aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:2.120.10.30 from=8 to=258 evalue=4.7e-40 interpro_id=IPR011042 interpro_description=Six-bladed beta-propeller, TolB-like)
DPP6 N-terminal domain-like (db=superfamily db_id=SSF82171 from=6 to=267 evalue=5.3e-29)
PD40 (db=HMMPfam db_id=PF07676 from=19 to=55 evalue=2.0e-09 interpro_id=IPR011659 interpro_description=WD40-like Beta Propeller)
ACD34_38_6

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4947..5978
DNA (1032bp) protein (344aa)
peptidase M23 family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=38 to=51)
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=110 to=227 evalue=2.2e-32 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
ACD34_38_7

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6956..7444
DNA (489bp) protein (163aa)
hypothetical protein
seg (db=Seg db_id=seg from=139 to=162)
OVARIAN CARCINOMA ANTIGEN CA125-RELATED (db=HMMPanther db_id=PTHR20930 from=35 to=129 evalue=2.7e-05)
Uncharacterized protein {ECO:0000313|EMBL:EKD88718.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD34_38_8

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7682..8551
DNA (870bp) protein (290aa)
iron-sulfur binding protein
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=132 to=143 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
alpha-helical ferredoxin (db=superfamily db_id=SSF46548 from=77 to=195 evalue=1.6e-17 interpro_id=IPR009051 interpro_description=Alpha-helical ferredoxin GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: iron-sulfur cluster binding (GO:0051536), Biological Process: oxidation reduction (GO:0055114))
DUF1730 (db=HMMPfam db_id=PF08331 from=2 to=78 evalue=1.6e-14 interpro_id=IPR013542 interpro_description=Domain of unknown function DUF1730)
ACD34_38_9

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9144..9323
DNA (180bp) protein (60aa)
seg (db=Seg db_id=seg from=2 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKD88710.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD34_38_10

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9591..9926
DNA (336bp) protein (112aa)
anti-sigma factor antagonist
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
Anti-sigma factor antagonist SpoIIaa (db=superfamily db_id=SSF52091 from=1 to=111 evalue=5.9e-24 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
no description (db=Gene3D db_id=G3DSA:3.30.750.24 from=1 to=108 evalue=1.7e-19 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
ACD34_38_11

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9939..14138
DNA (4200bp) protein (1400aa)
hypothetical protein
seg (db=Seg db_id=seg from=977 to=987)
no description (db=HMMSmart db_id=SM00331 from=1179 to=1396 evalue=7.5e-58 interpro_id=IPR001932 interpro_description=Protein phosphatase 2C-related GO=Molecular Function: catalytic activity (GO:0003824))
SpoIIE (db=HMMPfam db_id=PF07228 from=1206 to=1396 evalue=2.8e-52 interpro_id=IPR010822 interpro_description=Sporulation stage II, protein E C-terminal GO=Molecular Function: phosphoprotein phosphatase activity (GO:0004721))
ACD34_38_12

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comp(14146..14547)
DNA (402bp) protein (134aa)
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
seg (db=Seg db_id=seg from=35 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Uncharacterized protein {ECO:0000313|EMBL:EKD88713.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD34_38_13

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14861..15790
DNA (930bp) protein (310aa)
putative two-component sensor histidine kinase
coiled-coil (db=Coil db_id=coil from=121 to=142 evalue=NA)
coiled-coil (db=Coil db_id=coil from=36 to=71 evalue=NA)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=34 to=307 evalue=2.6e-10)
ACD34_38_14

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15834..16877
DNA (1044bp) protein (348aa)
LytR family transcriptional protein
seg (db=Seg db_id=seg from=23 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
LytR_cpsA_psr (db=HMMPfam db_id=PF03816 from=113 to=262 evalue=2.9e-41 interpro_id=IPR004474 interpro_description=Cell envelope-related transcriptional attenuator)
ACD34_38_15

Not on your lists

16973..17866
DNA (894bp) protein (298aa)
hypothetical protein
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=123 to=277 evalue=1.9e-16 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
Phage_integr_N (db=HMMPfam db_id=PF02899 from=19 to=101 evalue=2.0e-12 interpro_id=IPR004107 interpro_description=Integrase, N-terminal SAM-like, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA integration (GO:0015074))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=123 to=292 evalue=1.2e-11 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Displaying 15 items

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