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ACD34_43

Alias: ACD34_91970.3894.10

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD34_43_1

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comp(2..196)
DNA (195bp) protein (65aa)
2..196 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD88386.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD34_43_2

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comp(359..754)
DNA (396bp) protein (132aa)
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 n=12 Tax=Clostridium RepID=RS9_CLOB1 (db=UNIREF evalue=8.0e-29 bit_score=129.0 identity=48.84 coverage=95.4545454545455)
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=70 to=88 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=4 to=131 evalue=2.8e-40 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
ACD34_43_3

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comp(770..1198)
DNA (429bp) protein (143aa)
rplM; 50S ribosomal protein L13
50S ribosomal protein L13 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFF6_THET1 (db=UNIREF evalue=5.0e-39 bit_score=162.0 identity=55.47 coverage=94.4055944055944)
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=5 to=142 evalue=8.9e-58 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=16 to=141 evalue=8.1e-47 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_43_4

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comp(1235..1744)
DNA (510bp) protein (170aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCA1_9FIRM (db=UNIREF evalue=2.0e-19 bit_score=98.2 identity=35.62 coverage=84.7058823529412)
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=1 to=158 evalue=1.3e-30 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
no description (db=Gene3D db_id=G3DSA:3.30.70.660 from=20 to=155 evalue=9.4e-27 interpro_id=IPR020095 interpro_description=Pseudouridine synthase I, TruA, C-terminal GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
ACD34_43_5
BJP_08E140C01_Anaerolineales_40_8, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(2067..2201)
DNA (135bp) protein (45aa)
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=RL17_ALKOO (db=UNIREF evalue=6.0e-11 bit_score=69.7 identity=69.05 coverage=91.1111111111111)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=2 to=42 evalue=6.7e-17 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L17 (db=HMMPfam db_id=PF01196 from=1 to=42 evalue=1.6e-16 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_43_6

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comp(2493..3458)
DNA (966bp) protein (322aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=2 Tax=Roseiflexus RepID=RPOA_ROSCS (db=UNIREF evalue=5.0e-77 bit_score=291.0 identity=46.3 coverage=95.0310559006211)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=21 to=312 evalue=2.7e-116 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
no description (db=HMMSmart db_id=SM00662 from=21 to=228 evalue=3.0e-63 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350))
ACD34_43_7

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comp(3510..3932)
DNA (423bp) protein (141aa)
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=RS4_THERP (db=UNIREF evalue=9.0e-40 bit_score=165.0 identity=58.16 coverage=98.5815602836879)
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=28 to=52 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=1 to=140 evalue=1.0e-45)
Displaying 7 items

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