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ACD34_64

Alias: ACD34_22487.9134.10

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD34_64_1

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comp(3..116)
DNA (114bp) protein (38aa)
Ribosomal proteins L15p and L18e (db=superfamily db_id=SSF52080 from=4 to=38 evalue=8.4e-07 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
Uncharacterized protein {ECO:0000313|EMBL:EKD89223.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD34_64_2

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comp(113..325)
DNA (213bp) protein (71aa)
rpmD; 50S ribosomal protein L30
RIBOSOMAL_L30 (db=PatternScan db_id=PS00634 from=30 to=62 evalue=0.0 interpro_id=IPR018038 interpro_description=Ribosomal protein L30, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L30p (db=HMMPIR db_id=PIRSF002211 from=1 to=68 evalue=3.4e-24 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmD_bact: ribosomal protein L30 (db=HMMTigr db_id=TIGR01308 from=12 to=66 evalue=2.6e-21 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD34_64_3

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comp(318..848)
DNA (531bp) protein (177aa)
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B428_HERA2 (db=UNIREF evalue=9.0e-42 bit_score=172.0 identity=56.17 coverage=90.9604519774011)
seg (db=Seg db_id=seg from=46 to=54)
rpsE_bact: ribosomal protein S5 (db=HMMTigr db_id=TIGR01021 from=10 to=165 evalue=7.9e-87 interpro_id=IPR005712 interpro_description=Ribosomal protein S5, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD34_64_4

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comp(876..1241)
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 n=2 Tax=Clostridium RepID=RL18_CLOCE (db=UNIREF evalue=4.0e-33 bit_score=143.0 identity=58.68 coverage=98.3606557377049)
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=6 to=121 evalue=5.3e-52 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L18p (db=HMMPfam db_id=PF00861 from=6 to=121 evalue=1.2e-38 interpro_id=IPR005484 interpro_description=Ribosomal protein L18/L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_5

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comp(1252..1809)
DNA (558bp) protein (186aa)
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 n=10 Tax=Bacillaceae RepID=RL6_BACST (db=UNIREF evalue=2.0e-45 bit_score=184.0 identity=55.76 coverage=87.6344086021505)
seg (db=Seg db_id=seg from=166 to=185)
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=177 evalue=1.9e-97 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD34_64_6

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comp(1837..2250)
DNA (414bp) protein (138aa)
rpsH; 30S ribosomal protein S8
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=107 to=124 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=5 to=137 evalue=2.3e-47 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=2 to=137 evalue=5.9e-47 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_7

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comp(2273..2455)
DNA (183bp) protein (61aa)
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 type Z n=4 Tax=Dehalococcoides RepID=RS14Z_DEHE1 (db=UNIREF evalue=1.0e-14 bit_score=82.0 identity=78.72 coverage=75.4098360655738)
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=22 to=44 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=12 to=60 evalue=1.5e-28 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_8

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comp(2457..2999)
DNA (543bp) protein (181aa)
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 n=2 Tax=Clostridia RepID=A4XLR8_CALS8 (db=UNIREF evalue=1.0e-70 bit_score=268.0 identity=69.54 coverage=95.5801104972376)
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=57 to=73 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=1 to=179 evalue=2.9e-103)
ACD34_64_9

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comp(3021..3353)
DNA (333bp) protein (111aa)
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 n=38 Tax=Brucellaceae RepID=RL24_BRUA1 (db=UNIREF evalue=2.0e-18 bit_score=94.7 identity=50.94 coverage=89.1891891891892)
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=2 to=108 evalue=7.8e-34 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translation proteins SH3-like domain (db=superfamily db_id=SSF50104 from=4 to=107 evalue=9.5e-28 interpro_id=IPR008991 interpro_description=Translation protein SH3-like)
ACD34_64_10

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comp(3377..3748)
DNA (372bp) protein (124aa)
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 n=1 Tax=Conexibacter woesei DSM 14684 RepID=D3FEV5_CONWI (db=UNIREF evalue=3.0e-46 bit_score=187.0 identity=74.8 coverage=97.5806451612903)
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=123 evalue=2.5e-78 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD34_64_11

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comp(3745..4023)
DNA (279bp) protein (93aa)
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 n=2 Tax=Roseiflexus RepID=RS17_ROSCS (db=UNIREF evalue=6.0e-14 bit_score=79.7 identity=53.66 coverage=83.8709677419355)
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=4 to=74 evalue=1.5e-29 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=1 to=80 evalue=1.2e-21 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_12

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comp(4020..4232)
DNA (213bp) protein (71aa)
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 n=64 Tax=Bacillus RepID=RL29_BACAA (db=UNIREF evalue=1.0e-10 bit_score=68.9 identity=50.77 coverage=90.1408450704225)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=4 to=60 evalue=4.0e-17 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=1 to=66 evalue=3.0e-16 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_13

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comp(4229..4657)
DNA (429bp) protein (143aa)
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=RL16_THEEB (db=UNIREF evalue=9.0e-45 bit_score=182.0 identity=64.71 coverage=94.4055944055944)
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=59 to=70 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=2.0e-73 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD34_64_14

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comp(4706..5383)
DNA (678bp) protein (226aa)
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=3 Tax=Chloroflexus RepID=RS3_CHLAA (db=UNIREF evalue=1.0e-70 bit_score=269.0 identity=61.72 coverage=92.0353982300885)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=163 to=197 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=211 evalue=1.1e-117 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD34_64_15

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comp(5439..5780)
DNA (342bp) protein (114aa)
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 n=4 Tax=Lactobacillaceae RepID=RL22_PEDPA (db=UNIREF evalue=2.0e-20 bit_score=101.0 identity=47.75 coverage=96.4912280701754)
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=7 to=109 evalue=1.1e-30 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=7 to=111 evalue=7.6e-30 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_16

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comp(5783..6061)
DNA (279bp) protein (93aa)
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 n=4 Tax=Clostridiales RepID=RS19_CLOTH (db=UNIREF evalue=2.0e-37 bit_score=157.0 identity=79.79 coverage=97.8494623655914)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=91 evalue=3.0e-60 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD34_64_17

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comp(6100..6936)
DNA (837bp) protein (279aa)
rplB; 50S ribosomal protein L2
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=3 Tax=Chloroflexus RepID=RL2_CHLAA (db=UNIREF evalue=5.0e-106 bit_score=387.0 identity=67.77 coverage=97.4910394265233)
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=3 to=275 evalue=9.2e-181 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
ACD34_64_18

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comp(6936..7238)
DNA (303bp) protein (101aa)
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 n=5 Tax=Dehalococcoides RepID=RL23_DEHE1 (db=UNIREF evalue=3.0e-10 bit_score=67.4 identity=45.36 coverage=91.0891089108911)
seg (db=Seg db_id=seg from=47 to=60)
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=97 evalue=5.4e-24 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_19

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comp(7251..7877)
DNA (627bp) protein (209aa)
rplD; 50S ribosomal protein L4
50S ribosomal protein L4 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2K6_SPHTD (db=UNIREF evalue=3.0e-50 bit_score=201.0 identity=48.28 coverage=96.6507177033493)
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=208 evalue=2.4e-66 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=17 to=208 evalue=5.8e-66 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
ACD34_64_20

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comp(7919..8548)
DNA (630bp) protein (210aa)
rplC; 50S ribosomal protein L3
50S ribosomal protein L3 n=3 Tax=Chloroflexus RepID=RL3_CHLAA (db=UNIREF evalue=4.0e-59 bit_score=230.0 identity=58.37 coverage=98.5714285714286)
RIBOSOMAL_L3 (db=PatternScan db_id=PS00474 from=101 to=124 evalue=0.0 interpro_id=IPR019926 interpro_description=Ribosomal protein L3, conserved site)
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=4 to=204 evalue=1.1e-110 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD34_64_21

Not on your lists


comp(8812..9123)
DNA (312bp) protein (104aa)
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 n=5 Tax=Chloroflexaceae RepID=RS10_CHLAA (db=UNIREF evalue=6.0e-40 bit_score=166.0 identity=74.51 coverage=97.1153846153846)
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=30 to=45 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=5 to=103 evalue=1.5e-65 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Displaying 21 items

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