ggKbase home page

ACD35_38

Alias: ACD35_53959.16129.14

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD35_38_1

Not on your lists

1..417
DNA (417bp) protein (139aa)
hypothetical protein
Extracellular solute-binding protein family 1 n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CV10_PAESJ (db=UNIREF evalue=4.0e-21 bit_score=103.0 identity=48.53 coverage=94.9640287769784)
seg (db=Seg db_id=seg from=76 to=91)
DUF3502 (db=HMMPfam db_id=PF12010 from=1 to=136 evalue=4.8e-34)
ACD35_38_2

Not on your lists

511..1440
DNA (930bp) protein (310aa)
sugar ABC transporter permease
sugar ABC transporter permease
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6D2_PAESJ (db=UNIREF evalue=5.0e-87 bit_score=324.0 identity=59.57 coverage=89.0322580645161)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
ACD35_38_3

Not on your lists

comp(1415..1603)
DNA (189bp) protein (63aa)
1415..1603 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD87895.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD35_38_4

Not on your lists

1886..2392
DNA (507bp) protein (169aa)
sugar ABC transporter permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=30)
seg (db=Seg db_id=seg from=137 to=153)
ACD35_38_5

Not on your lists

2468..3121
DNA (654bp) protein (218aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=34 to=212 evalue=2.8e-20)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=33 to=209 evalue=2.2e-15)
PRK (db=HMMPfam db_id=PF00485 from=35 to=190 evalue=9.8e-08 interpro_id=IPR006083 interpro_description=Phosphoribulokinase/uridine kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: metabolic process (GO:0008152), Molecular Function: kinase activity (GO:0016301))
ACD35_38_6

Not on your lists

3135..4604
DNA (1470bp) protein (490aa)
gtfA1; sucrose phosphorylase GtfA (EC:2.4.1.7)
gtfA1; sucrose phosphorylase GtfA (EC:2.4.1.7)
Sucrose phosphorylase n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BF74_9BACI (db=UNIREF evalue=0.0 bit_score=669.0 identity=67.81 coverage=94.8979591836735)
seg (db=Seg db_id=seg from=471 to=480)
ACD35_38_7

Not on your lists

4613..5413
DNA (801bp) protein (267aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QFQ0_SPILD (db=UNIREF evalue=2.0e-52 bit_score=209.0 identity=38.35 coverage=97.3782771535581)
seg (db=Seg db_id=seg from=173 to=182)
NIF3 (NGG1p interacting factor 3)-like (db=superfamily db_id=SSF102705 from=1 to=266 evalue=7.4e-39 interpro_id=IPR002678 interpro_description=NGG1p interacting factor 3, NIF3)
ACD35_38_8

Not on your lists

5425..5733
DNA (309bp) protein (103aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
DUF3237 (db=HMMPfam db_id=PF11578 from=7 to=92 evalue=2.4e-20)
Uncharacterized protein {ECO:0000313|EMBL:EKD87890.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD35_38_9

Not on your lists

5724..6509
DNA (786bp) protein (262aa)
esterase
coiled-coil (db=Coil db_id=coil from=179 to=200 evalue=NA)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=2 to=259 evalue=3.9e-50)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=21 to=261 evalue=6.4e-41)
ACD35_38_10

Not on your lists

comp(6681..6998)
DNA (318bp) protein (106aa)
NUDIX hydrolase
NUDIX hydrolase n=2 Tax=Chloroflexus RepID=A9WHH3_CHLAA (db=UNIREF evalue=5.0e-16 bit_score=86.7 identity=46.67 coverage=95.2830188679245)
Nudix (db=superfamily db_id=SSF55811 from=1 to=103 evalue=2.7e-15 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=1 to=103 evalue=6.4e-13 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD35_38_11

Not on your lists

comp(7448..8452)
DNA (1005bp) protein (335aa)
putative LacI family transcriptional regulator
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=60 to=331 evalue=1.5e-81)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=160 to=301 evalue=5.3e-40)
Peripla_BP_1 (db=HMMPfam db_id=PF00532 from=59 to=310 evalue=5.6e-32 interpro_id=IPR001761 interpro_description=Periplasmic binding protein/LacI transcriptional regulator)
ACD35_38_12

Not on your lists

comp(8843..9232)
DNA (390bp) protein (130aa)
RbsD or FucU transport n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN30_OPITP (db=UNIREF evalue=8.0e-42 bit_score=172.0 identity=61.24 coverage=98.4615384615385)
transport protein RbsD/FucU
Ribose transport protein RbsD (db=superfamily db_id=SSF102546 from=1 to=128 evalue=2.8e-25 interpro_id=IPR007721 interpro_description=RbsD/FucU transport GO=Biological Process: carbohydrate transport (GO:0008643))
RbsD_FucU (db=HMMPfam db_id=PF05025 from=1 to=128 evalue=3.0e-24 interpro_id=IPR007721 interpro_description=RbsD/FucU transport GO=Biological Process: carbohydrate transport (GO:0008643))
ACD35_38_13

Not on your lists

comp(9294..10364)
DNA (1071bp) protein (357aa)
Mannose-1-phosphate guanylyltransferase (GDP) n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B2A1_HERA2 (db=UNIREF evalue=3.0e-89 bit_score=332.0 identity=43.55 coverage=97.1988795518207)
mannose-1-phosphate guanylyltransferase (GDP) (EC:2.7.7.22)
mannose-1-phosphate guanylyltransferase (GDP) (EC:2.7.7.22)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=1 to=356 evalue=1.9e-102)
ACD35_38_14

Not on your lists

comp(10375..11193)
DNA (819bp) protein (273aa)
cytidyltransferase-like protein
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=137 to=258 evalue=5.4e-15 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=137 to=271 evalue=2.2e-13)
cyt_tran_rel: cytidyltransferase-related (db=HMMTigr db_id=TIGR00125 from=139 to=205 evalue=1.9e-12 interpro_id=IPR004821 interpro_description=Cytidyltransferase-related GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058))
ACD35_38_15

Not on your lists

comp(11193..11990)
DNA (798bp) protein (266aa)
cytidyltransferase
Cytidyltransferase-related protein {ECO:0000313|EMBL:EKD87882.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD35_38_16

Not on your lists

comp(12089..13141)
DNA (1053bp) protein (351aa)
GDP-mannose 3,5-epimerase
GDP-mannose 3,5-epimerase
NAD-dependent epimerase/dehydratase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CTS4_9BACT (db=UNIREF evalue=2.0e-107 bit_score=392.0 identity=59.24 coverage=88.6039886039886)
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=35)
ACD35_38_17

Not on your lists

13663..15042
DNA (1380bp) protein (460aa)
Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPI8_9CLOT (db=UNIREF evalue=8.0e-109 bit_score=397.0 identity=48.87 coverage=86.0869565217391)
ABC transporter substrate-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=21 to=54)
ACD35_38_18

Not on your lists

15216..16088
DNA (873bp) protein (291aa)
binding-protein-dependent transport system inner membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=258 to=280)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=222)
Displaying 18 items

View Taxonomy