ggKbase home page

ACD12_227

Alias: ACD12_142550.2931.4

Search features with annotation key words

Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD12_227_1
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists


1..1218
DNA (1218bp) protein (406aa)
pnp; polynucleotide phosphorylase
Polyribonucleotide nucleotidyltransferase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIW5_9FIRM (db=UNIREF evalue=4.0e-116 bit_score=421.0 identity=55.05 coverage=92.6108374384236)
seg (db=Seg db_id=seg from=49 to=62)
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (db=HMMPanther db_id=PTHR11252 from=1 to=400 evalue=2.7e-154 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402))
ACD12_227_2
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

1276..1623
DNA (348bp) protein (116aa)
seg (db=Seg db_id=seg from=49 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
hypothetical protein cdivTM_30108 Tax=GWA2_Berkelbacteria_35_9
ACD12_227_3

Not on your lists

1656..2015
DNA (360bp) protein (120aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
Uncharacterized protein {ECO:0000313|EMBL:EKE15256.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_227_4

Not on your lists

2037..2405
DNA (369bp) protein (123aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=75)
seg (db=Seg db_id=seg from=48 to=66)
Uncharacterized protein {ECO:0000313|EMBL:EKE15257.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD12_227_5
GWA2_Berkelbacteria_35_9, Berkelbacteria, Bacteria

Not on your lists

comp(2626..2964)
DNA (339bp) protein (113aa)
type II secretion system protein E
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=110 evalue=3.9e-16)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=110 evalue=7.2e-15)
type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB alias=ACD12_142550.2931.4G0005,ACD12_142550.2931.4_5,ACD12_C00227G00005 id=5265 tax=ACD12 species=Desulfovibrio sp. FW1012B genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OP11 organism_desc=
Displaying 5 items

View Taxonomy