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ACD40_29

Alias: ACD40_43155.5019.17

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD40_29_1
Microgenomates bacterium GW2011_GWF2_46_18, Microgenomates, Bacteria

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495..611
DNA (117bp) protein (39aa)
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=2 to=29 evalue=6.0e-06 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KKU27911.1}; TaxID=1618540 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWF2_46_18.;"
ACD40_29_2

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867..1178
DNA (312bp) protein (104aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
seg (db=Seg db_id=seg from=46 to=58)
ACD40_29_3

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1202..1525
DNA (324bp) protein (108aa)
1202..1525 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD80232.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_29_4

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1681..1851
DNA (171bp) protein (57aa)
1681..1851 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD80233.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_29_5

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1858..2406
DNA (549bp) protein (183aa)
Isopentenyl-diphosphate delta-isomerase, type 1 n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZX54_9BACT (db=UNIREF evalue=4.0e-24 bit_score=114.0 identity=37.36 coverage=89.6174863387978)
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Nudix (db=superfamily db_id=SSF55811 from=3 to=173 evalue=1.6e-28 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
IPP_isom_1: isopentenyl-diphosphate delta- (db=HMMTigr db_id=TIGR02150 from=5 to=171 evalue=1.2e-27 interpro_id=IPR011876 interpro_description=Isopentenyl-diphosphate delta-isomerase, type 1 GO=Molecular Function: isopentenyl-diphosphate delta-isomerase activity (GO:0004452), Biological Process: isoprenoid biosynthetic process (GO:0008299))
ACD40_29_6

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2403..2630
DNA (228bp) protein (76aa)
2403..2630 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD80235.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_29_7

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2627..3532
DNA (906bp) protein (302aa)
hypothetical protein
seg (db=Seg db_id=seg from=76 to=97)
GHMP_KINASES_ATP (db=PatternScan db_id=PS00627 from=76 to=87 evalue=0.0 interpro_id=IPR006203 interpro_description=GHMP kinase, ATP-binding, conserved site GO=Molecular Function: ATP binding (GO:0005524))
mevalon_kin: mevalonate kinase (db=HMMTigr db_id=TIGR00549 from=7 to=269 evalue=1.6e-45 interpro_id=IPR006205 interpro_description=Mevalonate kinase GO=Molecular Function: mevalonate kinase activity (GO:0004496), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: isoprenoid biosynthetic process (GO:0008299))
ACD40_29_8

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3514..4488
DNA (975bp) protein (325aa)
mvk; mevalonate kinase (EC:2.7.1.36)
seg (db=Seg db_id=seg from=113 to=125)
mevalon_kin: mevalonate kinase (db=HMMTigr db_id=TIGR00549 from=10 to=290 evalue=1.2e-70 interpro_id=IPR006205 interpro_description=Mevalonate kinase GO=Molecular Function: mevalonate kinase activity (GO:0004496), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: isoprenoid biosynthetic process (GO:0008299))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=5 to=198 evalue=9.3e-43 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
ACD40_29_9

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4476..5057
DNA (582bp) protein (194aa)
mvaD; diphosphomevalonate decarboxylase
seg (db=Seg db_id=seg from=102 to=111)
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=4 to=185 evalue=7.8e-48 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=4 to=175 evalue=3.0e-34 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Displaying 9 items

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