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ACD41_52

Alias: ACD41_7121.15260.17

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_52_1

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1..783
DNA (783bp) protein (261aa)
dTDP-4-dehydrorhamnose reductase
rmlD: dTDP-4-dehydrorhamnose reductase (db=HMMTigr db_id=TIGR01214 from=1 to=256 evalue=1.8e-89 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
RmlD_sub_bind (db=HMMPfam db_id=PF04321 from=3 to=254 evalue=8.0e-88 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=257 evalue=1.6e-78)
ACD41_52_2

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comp(753..1676)
DNA (924bp) protein (308aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKD78454.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_52_3

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1682..2941
DNA (1260bp) protein (420aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV73_SULAA (db=UNIREF evalue=8.0e-86 bit_score=321.0 identity=43.03 coverage=98.5714285714286)
seg (db=Seg db_id=seg from=374 to=387)
ACD41_52_4

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2956..4125
DNA (1170bp) protein (390aa)
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=305 to=317)
seg (db=Seg db_id=seg from=11 to=32)
ACD41_52_5

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4142..4561
DNA (420bp) protein (140aa)
rplI; 50S ribosomal protein L9
seg (db=Seg db_id=seg from=39 to=55)
50S RIBOSOMAL PROTEIN L9 (db=HMMPanther db_id=PTHR21368 from=1 to=127 evalue=2.3e-24 interpro_id=IPR000244 interpro_description=Ribosomal protein L9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L9: ribosomal protein L9 (db=HMMTigr db_id=TIGR00158 from=8 to=139 evalue=2.4e-20 interpro_id=IPR020594 interpro_description=Ribosomal protein L9, bacteria/chloroplast GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_52_6

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4564..6201
DNA (1638bp) protein (546aa)
CTP synthase (EC:6.3.4.2)
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=PYRG_HERA2 (db=UNIREF evalue=6.0e-136 bit_score=488.0 identity=46.93 coverage=96.5201465201465)
seg (db=Seg db_id=seg from=126 to=139)
ACD41_52_7

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comp(6198..6473)
DNA (276bp) protein (92aa)
50S ribosomal protein L27
50S ribosomal protein L27 n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XRI4_9CORY (db=UNIREF evalue=8.0e-21 bit_score=102.0 identity=68.49 coverage=78.2608695652174)
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=34 to=48 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=1 to=81 evalue=2.2e-35 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_52_8

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6533..7240
DNA (708bp) protein (236aa)
seg (db=Seg db_id=seg from=200 to=209)
seg (db=Seg db_id=seg from=116 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=224)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
ACD41_52_9

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7244..8527
DNA (1284bp) protein (428aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=SYG_THERP (db=UNIREF evalue=9.0e-141 bit_score=503.0 identity=55.33 coverage=96.9626168224299)
glyS_dimeric: glycyl-tRNA synthetase (db=HMMTigr db_id=TIGR00389 from=1 to=424 evalue=1.9e-180 interpro_id=IPR002315 interpro_description=Glycyl-tRNA synthetase, alpha2 dimer GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: glycyl-tRNA aminoacylation (GO:0006426))
ACD41_52_10

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8511..9782
DNA (1272bp) protein (424aa)
processing peptidase (EC:3.4.24.64)
INSULINASE (db=PatternScan db_id=PS00143 from=33 to=56 evalue=0.0 interpro_id=IPR001431 interpro_description=Peptidase M16, zinc-binding site GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
METALLOPROTEASE (db=HMMPanther db_id=PTHR11851 from=28 to=414 evalue=1.3e-104)
no description (db=Gene3D db_id=G3DSA:3.30.830.10 from=2 to=217 evalue=3.4e-60 interpro_id=IPR011237 interpro_description=Peptidase M16, core GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: metal ion binding (GO:0046872))
ACD41_52_11

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9785..10846
DNA (1062bp) protein (354aa)
hypothetical protein
seg (db=Seg db_id=seg from=82 to=91)
seg (db=Seg db_id=seg from=149 to=165)
seg (db=Seg db_id=seg from=217 to=237)
ACD41_52_12

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10851..12296
DNA (1446bp) protein (482aa)
Methionyl-tRNA synthetase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDU2_THET1 (db=UNIREF evalue=7.0e-146 bit_score=521.0 identity=53.53 coverage=95.643153526971)
methionyl-tRNA synthetase
methionyl-tRNA synthetase
metG: methionyl-tRNA synthetase (db=HMMTigr db_id=TIGR00398 from=5 to=481 evalue=7.7e-158 interpro_id=IPR002304 interpro_description=Methionyl-tRNA synthetase, class Ia GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: methionine-tRNA ligase activity (GO:0004825), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: methionyl-tRNA aminoacylation (GO:0006431))
ACD41_52_13

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12293..12556
DNA (264bp) protein (88aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKD78465.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_52_14

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12541..13368
DNA (828bp) protein (276aa)
Hydrolase, TatD family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJA8_9FIRM (db=UNIREF evalue=4.0e-55 bit_score=218.0 identity=42.96 coverage=89.8550724637681)
Sec-independent protein translocase TatD (EC:3.1.21.-)
TATD_1 (db=PatternScan db_id=PS01137 from=4 to=12 evalue=0.0 interpro_id=IPR018228 interpro_description=Deoxyribonuclease, TatD-related, conserved site GO=Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888))
TATD_3 (db=PatternScan db_id=PS01091 from=209 to=225 evalue=0.0 interpro_id=IPR018228 interpro_description=Deoxyribonuclease, TatD-related, conserved site GO=Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888))
ACD41_52_15

Not on your lists

13381..14280
DNA (900bp) protein (300aa)
hypothetical protein
Putative DNA recombination protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVA7_9BACT (db=UNIREF evalue=1.0e-58 bit_score=229.0 identity=41.6 coverage=87.0)
coiled-coil (db=Coil db_id=coil from=271 to=299 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=22)
ACD41_52_16

Not on your lists

14291..14827
DNA (537bp) protein (179aa)
glucose-1-phosphate thymidylyltransferase
no description (db=Gene3D db_id=G3DSA:2.160.10.10 from=17 to=178 evalue=1.5e-34)
Trimeric LpxA-like enzymes (db=superfamily db_id=SSF51161 from=8 to=167 evalue=2.8e-33 interpro_id=IPR011004 interpro_description=Trimeric LpxA-like GO=Molecular Function: transferase activity (GO:0016740))
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF18 from=19 to=159 evalue=3.5e-21)
ACD41_52_17

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comp(14835..15248)
DNA (414bp) protein (138aa)
ATP synthase F1 subunit epsilon
coiled-coil (db=Coil db_id=coil from=90 to=111 evalue=NA)
ATP_synt_epsi: ATP synthase F1, epsilon (db=HMMTigr db_id=TIGR01216 from=3 to=133 evalue=1.5e-25 interpro_id=IPR001469 interpro_description=ATPase, F1 complex, delta/epsilon subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activit
ATP SYNTHASE EPSILON CHAIN (db=HMMPanther db_id=PTHR13822:SF2 from=2 to=133 evalue=2.4e-22)
Displaying 17 items

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