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ACD41_110

Alias: ACD41_4082.8961.16

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_110_1

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1..306
DNA (306bp) protein (102aa)
hypothetical protein cdiviTM7_00321 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25AF (db=UNIREF evalue=4.0e-09 bit_score=63.5 identity=36.56 coverage=89.2156862745098)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
Uncharacterized protein {ECO:0000313|EMBL:EKD78816.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_110_2

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272..1018
DNA (747bp) protein (249aa)
glycosyl transferase family protein
seg (db=Seg db_id=seg from=75 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=137 to=159)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=12 to=198 evalue=3.5e-46)
ACD41_110_3

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comp(998..1720)
DNA (723bp) protein (241aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
METHIONYL-TRNA FORMYLTRANSFERASE (db=HMMPanther db_id=PTHR11138 from=20 to=210 evalue=3.2e-48 interpro_id=IPR015518 interpro_description=Methionine tRNA Formyltransferase-like)
Formyltransferase (db=superfamily db_id=SSF53328 from=1 to=161 evalue=9.0e-43 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
no description (db=Gene3D db_id=G3DSA:3.40.50.170 from=1 to=160 evalue=5.4e-39 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD41_110_4

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comp(1717..2175)
DNA (459bp) protein (153aa)
Peptide deformylase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RPL6_9PROT (db=UNIREF evalue=5.0e-24 bit_score=113.0 identity=38.26 coverage=96.7320261437908)
def1; Formylmethionine deformylase
Pep_deformylase (db=HMMPfam db_id=PF01327 from=4 to=151 evalue=6.1e-44 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Peptide deformylase (db=superfamily db_id=SSF56420 from=2 to=152 evalue=1.7e-43 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
ACD41_110_5

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comp(2172..3086)
DNA (915bp) protein (305aa)
seg (db=Seg db_id=seg from=52 to=65)
Uncharacterized protein {ECO:0000313|EMBL:EKD78820.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_110_6

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comp(3070..3378)
DNA (309bp) protein (103aa)
seg (db=Seg db_id=seg from=90 to=96)
Uncharacterized protein {ECO:0000313|EMBL:EKD78821.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_110_7

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comp(3378..4184)
DNA (807bp) protein (269aa)
hypothetical protein
seg (db=Seg db_id=seg from=235 to=244)
LigB subunit of an aromatic-ring-opening dioxygenase LigAB (db=superfamily db_id=SSF53213 from=1 to=266 evalue=2.4e-31 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
LigB (db=HMMPfam db_id=PF02900 from=7 to=258 evalue=1.6e-28 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
ACD41_110_8

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comp(4186..5610)
DNA (1425bp) protein (475aa)
putative lipoprotein
seg (db=Seg db_id=seg from=463 to=474)
seg (db=Seg db_id=seg from=5 to=15)
Uncharacterized protein {ECO:0000313|EMBL:EKD78823.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_110_9

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5654..6319
DNA (666bp) protein (222aa)
polysaccharide pyruvyl transferase CsaB (EC:2.4.1.187)
seg (db=Seg db_id=seg from=12 to=22)
Glyco_tran_WecB (db=HMMPfam db_id=PF03808 from=130 to=201 evalue=5.2e-26 interpro_id=IPR004629 interpro_description=Glycosyl transferase WecB/TagA/CpsF GO=Biological Process: biosynthetic process (GO:0009058))
wecB_tagA_cpsF: glycosyl transferase, (db=HMMTigr db_id=TIGR00696 from=55 to=208 evalue=2.3e-18 interpro_id=IPR004629 interpro_description=Glycosyl transferase WecB/TagA/CpsF GO=Biological Process: biosynthetic process (GO:0009058))
ACD41_110_10

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6312..7718
DNA (1407bp) protein (469aa)
glutamyl/glutaminyl-tRNA synthetase
glutamyl/glutaminyl-tRNA synthetase
Glutamyl-tRNA synthetase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=D4H6S8_DENA2 (db=UNIREF evalue=3.0e-112 bit_score=409.0 identity=43.58 coverage=98.0810234541578)
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=10 to=21 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
ACD41_110_11

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7772..8962
DNA (1191bp) protein (397aa)
peptidase
Peptidase M23B n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCY5_9FIRM (db=UNIREF evalue=2.0e-26 bit_score=123.0 identity=27.97 coverage=90.4282115869018)
coiled-coil (db=Coil db_id=coil from=10 to=101 evalue=NA)
seg (db=Seg db_id=seg from=91 to=106)
Displaying 11 items

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