ggKbase home page

ACD42_28

Alias: ACD42_105288.9812.6

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD42_28_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..205)
DNA (204bp) protein (68aa)
Type II secretion system protein E n=1 Tax=Polaromonas sp. JS666 RepID=Q12F95_POLSJ (db=UNIREF evalue=7.0e-27 bit_score=122.0 identity=86.76 coverage=98.5294117647059)
type II secretion system protein E
pilB; type 4 fimbrial assembly protein pilB traffic ATPase; K02652 type IV pilus assembly protein PilB Tax=GWE1_Burkholderiales_65_30_curated
ACD42_28_2
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(740..1867)
DNA (1128bp) protein (376aa)
Farnesyl pyrophosphate synthetase n=6 Tax=Coxiella burnetii RepID=A9KEK2_COXBN (db=UNIREF evalue=1.0e-79 bit_score=300.0 identity=46.65 coverage=85.1063829787234)
ispB; polyprenyl synthetase (EC:2.5.1.-)
ispB; polyprenyl synthetase (EC:2.5.1.-)
POLYPRENYL_SYNTHASE_1 (db=PatternScan db_id=PS00723 from=99 to=113 evalue=0.0 interpro_id=IPR000092 interpro_description=Polyprenyl synthetase GO=Biological Process: isoprenoid biosynthetic process (GO:0008299))
ACD42_28_3
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1986..2297
DNA (312bp) protein (104aa)
rplU; 50S ribosomal protein L21
seg (db=Seg db_id=seg from=71 to=81)
RIBOSOMAL_L21 (db=PatternScan db_id=PS01169 from=72 to=94 evalue=0.0 interpro_id=IPR018258 interpro_description=Ribosomal protein L21, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L21: ribosomal protein L21 (db=HMMTigr db_id=TIGR00061 from=2 to=102 evalue=3.4e-53 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD42_28_4
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2341..2592
DNA (252bp) protein (84aa)
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 n=6 Tax=Coxiella burnetii RepID=RL27_COXB1 (db=UNIREF evalue=4.0e-29 bit_score=130.0 identity=75.9 coverage=97.6190476190476)
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=34 to=48 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=1 to=83 evalue=5.2e-43 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD42_28_5
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2857..3657
DNA (801bp) protein (267aa)
GTPase obg n=5 Tax=Legionella pneumophila RepID=OBG_LEGPA (db=UNIREF evalue=2.0e-93 bit_score=345.0 identity=63.08 coverage=96.6292134831461)
obgE; GTPase involved in cell partioning and DNA repair
obgE; GTPase involved in cell partioning and DNA repair
GTP1_OBG (db=PatternScan db_id=PS00905 from=140 to=153 evalue=0.0 interpro_id=IPR006074 interpro_description=GTP1/OBG, conserved site GO=Molecular Function: GTP binding (GO:0005525))
ACD42_28_6
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3651..3920)
DNA (270bp) protein (90aa)
ribosomal protein S20p
30S ribosomal protein S20 n=2 Tax=Nitrosococcus oceani RepID=RS20_NITOC (db=UNIREF evalue=3.0e-17 bit_score=90.5 identity=52.87 coverage=95.5555555555556)
S20: ribosomal protein S20 (db=HMMTigr db_id=TIGR00029 from=1 to=87 evalue=3.5e-28 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=2 to=84 evalue=6.3e-23 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD42_28_7
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4027..4485
DNA (459bp) protein (153aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=132)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
seg (db=Seg db_id=seg from=47 to=66)
ACD42_28_8
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4466..4924
DNA (459bp) protein (153aa)
integral membrane protein
Integral membrane protein n=5 Tax=Legionella pneumophila RepID=A5IBF3_LEGPC (db=UNIREF evalue=3.0e-35 bit_score=150.0 identity=50.0 coverage=98.6928104575163)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
ACD42_28_9
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5370..6908
DNA (1539bp) protein (513aa)
mviN; virulence factor
mviN; virulence factor
Virulence factor n=6 Tax=Coxiella burnetii RepID=A9KEJ2_COXBN (db=UNIREF evalue=2.0e-171 bit_score=605.0 identity=61.64 coverage=99.4152046783626)
transmembrane_regions (db=TMHMM db_id=tmhmm from=274 to=296)
ACD42_28_10
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6931..7842
DNA (912bp) protein (304aa)
Riboflavin biosynthesis protein RibF n=1 Tax=Rickettsiella grylli RepID=A8PPE9_9COXI (db=UNIREF evalue=2.0e-82 bit_score=308.0 identity=51.02 coverage=96.3815789473684)
riboflavin biosynthesis protein ribF
Riboflavin biosynthesis protein RibF/RibC types (db=HMMPIR db_id=PIRSF004491 from=1 to=303 evalue=4.6e-108 interpro_id=IPR002606 interpro_description=Riboflavin kinase/FAD synthetase GO=Molecular Function: FMN adenylyltransferase activity (GO:0003919), Molecular Function: riboflavin kinase activity (GO:0008531), Biological Process: riboflavin biosynthetic process (GO:0009231))
ribF: riboflavin biosynthesis protein RibF (db=HMMTigr db_id=TIGR00083 from=15 to=303 evalue=5.9e-84 interpro_id=IPR002606 interpro_description=Riboflavin kinase/FAD synthetase GO=Molecular Function: FMN adenylyltransferase activity (GO:0003919), Molecular Function: riboflavin kinase activity (GO:0008531), Biological Process: riboflavin biosynthetic process (GO:0009231))
ACD42_28_11
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7839..8117)
DNA (279bp) protein (93aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_39_13_curated
ACD42_28_12
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8189..8407
DNA (219bp) protein (73aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=25)
seg (db=Seg db_id=seg from=46 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
DUF2909 (db=HMMPfam db_id=PF11137 from=4 to=63 evalue=7.5e-15 interpro_id=IPR021313 interpro_description=Protein of unknown function DUF2909)
ACD42_28_13

Not on your lists

comp(8927..9145)
DNA (219bp) protein (73aa)
seg (db=Seg db_id=seg from=14 to=23)
seg (db=Seg db_id=seg from=35 to=40)
Uncharacterized protein {ECO:0000313|EMBL:EKD78180.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD42_28_14
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9229..9846
DNA (618bp) protein (206aa)
Isoleucyl-tRNA synthetase
ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES (db=HMMPanther db_id=PTHR11946 from=1 to=205 evalue=1.0e-71)
ISOLEUCYL TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11946:SF9 from=1 to=205 evalue=1.0e-71 interpro_id=IPR018353 interpro_description=Isoleucyl-tRNA synthetase GO=Molecular Function: isoleucine-tRNA ligase activity (GO:0004822), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Molecular Function: zinc ion binding (GO:0008270))
tRNA-synt_1 (db=HMMPfam db_id=PF00133 from=1 to=205 evalue=3.2e-64 interpro_id=IPR002300 interpro_description=Aminoacyl-tRNA synthetase, class Ia GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
Displaying 14 items

View Taxonomy