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ACD42_45

Alias: ACD42_325394.9950.7

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD42_45_1
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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2..388
DNA (387bp) protein (129aa)
Phosphoenolpyruvate carboxykinase [ATP] n=6 Tax=Coxiella burnetii RepID=PCKA_COXB1 (db=UNIREF evalue=4.0e-39 bit_score=163.0 identity=59.06 coverage=97.6744186046512)
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
PEP carboxykinase-like (db=superfamily db_id=SSF53795 from=1 to=126 evalue=1.7e-32)
no description (db=Gene3D db_id=G3DSA:3.90.228.20 from=1 to=127 evalue=9.9e-29 interpro_id=IPR013035 interpro_description=Phosphoenolpyruvate carboxykinase, C-terminal GO=Molecular Function: phosphoenolpyruvate carboxykinase activity (GO:0004611), Biological Process: gluconeogenesis (GO:0006094), Molecular Function: purine nucleotide binding (GO:0017076))
ACD42_45_2
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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385..1029
DNA (645bp) protein (215aa)
alanine racemase
UPF0001 (db=PatternScan db_id=PS01211 from=68 to=82 evalue=0.0 interpro_id=IPR011078 interpro_description=Predicted pyridoxal phosphate-dependent enzyme, YBL036C type)
Predicted pyridoxal 5'-phosphate-dependent enzyme, YBL036c type (db=HMMPIR db_id=PIRSF004848 from=1 to=214 evalue=1.0e-77 interpro_id=IPR011078 interpro_description=Predicted pyridoxal phosphate-dependent enzyme, YBL036C type)
TIGR00044: pyridoxal phosphate enzyme, YggS (db=HMMTigr db_id=TIGR00044 from=1 to=214 evalue=1.2e-72 interpro_id=IPR011078 interpro_description=Predicted pyridoxal phosphate-dependent enzyme, YBL036C type)
ACD42_45_3
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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1093..1674
DNA (582bp) protein (194aa)
integral membrane protein
Integral membrane protein n=6 Tax=Coxiella burnetii RepID=A9KDE2_COXBN (db=UNIREF evalue=1.0e-29 bit_score=132.0 identity=45.31 coverage=97.9381443298969)
seg (db=Seg db_id=seg from=169 to=183)
seg (db=Seg db_id=seg from=89 to=104)
ACD42_45_4
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1685..2206
DNA (522bp) protein (174aa)
hypothetical protein
seg (db=Seg db_id=seg from=27 to=36)
seg (db=Seg db_id=seg from=4 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
ACD42_45_5
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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2227..3114
DNA (888bp) protein (296aa)
acyltransferase
Acyltransferase family protein n=6 Tax=Coxiella burnetii RepID=A9KDC3_COXBN (db=UNIREF evalue=2.0e-68 bit_score=262.0 identity=49.19 coverage=82.4324324324324)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=9 to=30)
ACD42_45_6
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3116..3529
DNA (414bp) protein (138aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_39_13_curated
ACD42_45_7

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3495..4484
DNA (990bp) protein (330aa)
Porphobilinogen deaminase n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IF72_PSEHT (db=UNIREF evalue=4.0e-79 bit_score=298.0 identity=50.17 coverage=91.5151515151515)
hemC; porphobilinogen deaminase
PORPHOBILINOGEN_DEAM (db=PatternScan db_id=PS00533 from=255 to=271 evalue=0.0 interpro_id=IPR022419 interpro_description=Porphobilinogen deaminase, dipyrromethane cofactor binding site GO=Biological Process: peptidyl-pyrromethane cofactor linkage (GO:0018160), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
Porphobilinogen deaminase (db=HMMPIR db_id=PIRSF001438 from=28 to=329 evalue=2.2e-142 interpro_id=IPR000860 interpro_description=Tetrapyrrole biosynthesis, hydroxymethylbilane synthase GO=Molecular Function: hydroxymethylbilane synthase activity (GO:0004418), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
ACD42_45_8
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4477..5205
DNA (729bp) protein (243aa)
uroporphyrinogen III synthase HEM4
HemD-like (db=superfamily db_id=SSF69618 from=6 to=242 evalue=1.3e-42 interpro_id=IPR003754 interpro_description=Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO=Molecular Function: uroporphyrinogen-III synthase activity (GO:0004852), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
HEM4 (db=HMMPfam db_id=PF02602 from=21 to=235 evalue=3.4e-32 interpro_id=IPR003754 interpro_description=Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO=Molecular Function: uroporphyrinogen-III synthase activity (GO:0004852), Biological Process: tetrapyrrole biosynthetic process (GO:0033014))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR20845 from=104 to=225 evalue=4.9e-10)
ACD42_45_9
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5362..6048
DNA (687bp) protein (229aa)
seg (db=Seg db_id=seg from=201 to=213)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=19 to=36)
HemX (db=HMMPfam db_id=PF04375 from=101 to=184 evalue=9.8e-08 interpro_id=IPR007470 interpro_description=HemX)
ACD42_45_10
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6200..6808
DNA (609bp) protein (203aa)
hemY; protoporphyrinogen oxidase
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=156 to=170)
hemY; protoporphyrinogen IX and coproporphyrinogen III oxidase HemY Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_39_13_curated
ACD42_45_11
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6844..7302
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYX5_9GAMM (db=UNIREF evalue=1.0e-19 bit_score=99.0 identity=38.41 coverage=88.2352941176471)
hypothetical protein
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_39_13_curated
ACD42_45_12
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7439..7819)
DNA (381bp) protein (127aa)
rho; transcription termination factor Rho
ATP SYNTHASE (db=HMMPanther db_id=PTHR15184 from=6 to=103 evalue=4.0e-53)
TRANSCRIPTION TERMINATION FACTOR RHO (db=HMMPanther db_id=PTHR15184:SF2 from=6 to=103 evalue=4.0e-53)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=126 evalue=3.7e-33)
ACD42_45_13
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7759..8724)
DNA (966bp) protein (322aa)
Transcription termination factor rho n=5 Tax=Coxiella burnetii RepID=A9KDD8_COXBN (db=UNIREF evalue=3.0e-136 bit_score=488.0 identity=80.49 coverage=88.8198757763975)
rho; transcription termination factor Rho
rho; transcription termination factor Rho
seg (db=Seg db_id=seg from=288 to=301)
ACD42_45_14

Not on your lists

comp(8910..9236)
DNA (327bp) protein (109aa)
trxA; thioredoxin 1
Thioredoxin I n=24 Tax=Neisseria RepID=A9M013_NEIM0 (db=UNIREF evalue=3.0e-37 bit_score=156.0 identity=59.43 coverage=96.3302752293578)
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=25 to=43 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
thioredoxin: thioredoxin (db=HMMTigr db_id=TIGR01068 from=8 to=108 evalue=1.3e-54 interpro_id=IPR005746 interpro_description=Thioredoxin GO=Biological Process: glycerol ether metabolic process (GO:0006662), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
ACD42_45_15
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9521..9946
DNA (426bp) protein (142aa)
Thymidine kinase n=6 Tax=Coxiella burnetii RepID=KITH_COXBU (db=UNIREF evalue=3.0e-50 bit_score=200.0 identity=65.69 coverage=95.7746478873239)
tdk; thymidine kinase (EC:2.7.1.21)
TK_CELLULAR_TYPE (db=PatternScan db_id=PS00603 from=120 to=133 evalue=0.0 interpro_id=IPR020633 interpro_description=Thymidine kinase, conserved site GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
TK (db=HMMPfam db_id=PF00265 from=9 to=133 evalue=2.4e-35 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
Displaying 15 items

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