Alias: ACD42_361359.13677.7
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD42_158_1
uncultured bacterium, Bacteria
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Not on your lists |
3..272
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50S ribosomal protein L16
Ribosomal protein L16p/L10e (db=superfamily db_id=SSF54686 from=1 to=86 evalue=2.0e-32 interpro_id=IPR016180 interpro_description=Ribosomal protein L10e/L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L16 (db=HMMPfam db_id=PF00252 from=1 to=84 evalue=2.9e-31 interpro_id=IPR016180 interpro_description=Ribosomal protein L10e/L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S/60S RIBOSOMAL PROTEIN L16 (db=HMMPanther db_id=PTHR12220:SF11 from=1 to=86 evalue=8.6e-30)
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ACD42_158_2
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
275..466
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seg (db=Seg db_id=seg from=4 to=25)
RIBOSOMAL_L29 (db=PatternScan db_id=PS00579 from=39 to=53 evalue=0.0 interpro_id=IPR018254 interpro_description=Ribosomal protein L29, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=3 to=59 evalue=7.9e-20 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=5 to=60 evalue=1.2e-16 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_3
uncultured bacterium, Bacteria
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Not on your lists |
463..702
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Conserved hypothetical protein
30S ribosomal protein S17 n=6 Tax=Shewanella RepID=RS17_SHEHH (db=UNIREF evalue=1.0e-25 bit_score=118.0 identity=67.09 coverage=97.5)
RIBOSOMAL_S17 (db=PatternScan db_id=PS00056 from=56 to=68 evalue=0.0 interpro_id=IPR019979 interpro_description=Ribosomal protein S17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=5 to=76 evalue=1.8e-47 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_4
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
721..1089
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50S ribosomal protein L14 n=1 Tax=Methylococcus capsulatus RepID=RL14_METCA (db=UNIREF evalue=4.0e-51 bit_score=202.0 identity=81.97 coverage=98.3739837398374)
rplN; 50S ribosomal protein L14
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=3.9e-80 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
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ACD42_158_5
uncultured bacterium, Bacteria
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Not on your lists |
1111..1446
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50S ribosomal protein L24
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=7 to=24 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=108 evalue=6.3e-43 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=3 to=111 evalue=3.2e-27 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_6
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
1466..2008
|
rplE; 50S ribosomal protein L5
seg (db=Seg db_id=seg from=154 to=164)
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=58 to=74 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=5 to=180 evalue=4.9e-96 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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used in concatenation gene tree
kelly wrighton
(11/15/12)
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ACD42_158_7
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
2030..2326
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rpsN; 30S ribosomal protein S14
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=60 to=82 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=1 to=98 evalue=6.8e-36 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_8
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
2365..2760
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30S ribosomal protein S8
seg (db=Seg db_id=seg from=74 to=86)
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=101 to=118 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=5 to=130 evalue=4.1e-44 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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used in concatenation tree
kelly wrighton
(11/15/12)
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ACD42_158_9
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
2771..3307
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rplF; 50S ribosomal protein L6
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=155 to=163 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=3 to=177 evalue=3.2e-100 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=3 to=177 evalue=1.4e-69 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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used in concatenation gene tree
kelly wrighton
(11/15/12)
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ACD42_158_10
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
3307..3669
|
rplR; 50S ribosomal protein L18
seg (db=Seg db_id=seg from=68 to=83)
seg (db=Seg db_id=seg from=9 to=23)
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=6 to=120 evalue=4.0e-49 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_11
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
3684..4202
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30S ribosomal protein S5
seg (db=Seg db_id=seg from=44 to=56)
RIBOSOMAL_S5 (db=PatternScan db_id=PS00585 from=32 to=64 evalue=0.0 interpro_id=IPR018192 interpro_description=Ribosomal protein S5, N-terminal, conserved site)
rpsE_bact: ribosomal protein S5 (db=HMMTigr db_id=TIGR01021 from=12 to=167 evalue=3.6e-87 interpro_id=IPR005712 interpro_description=Ribosomal protein S5, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
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ACD42_158_12
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
4214..4408
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rpmD; 50S ribosomal protein L30
Ribosomal protein L30p (db=HMMPIR db_id=PIRSF002211 from=1 to=63 evalue=8.3e-28 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmD_bact: ribosomal protein L30 (db=HMMTigr db_id=TIGR01308 from=7 to=61 evalue=2.8e-17 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L30 (db=HMMPfam db_id=PF00327 from=6 to=56 evalue=6.2e-17 interpro_id=IPR000517 interpro_description=Ribosomal protein L30p/L7e, conserved region GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_13
uncultured bacterium, Bacteria
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Not on your lists |
4405..4836
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rplO; 50S ribosomal subunit protein L15
50S ribosomal protein L15 n=1 Tax=Teredinibacter turnerae T7901 RepID=RL15_TERTT (db=UNIREF evalue=5.0e-41 bit_score=169.0 identity=61.72 coverage=88.1944444444444)
seg (db=Seg db_id=seg from=129 to=141)
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=2 to=143 evalue=3.5e-64 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
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ACD42_158_14
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
4870..5760
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secY; preprotein translocase subunit SecY
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=170)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=199)
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ACD42_158_15
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
5786..6958
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secY; preprotein translocase subunit SecY
secY; preprotein translocase subunit SecY
Protein translocase subunit n=5 Tax=Coxiella burnetii RepID=A9KD11_COXBN (db=UNIREF evalue=2.0e-152 bit_score=542.0 identity=77.81 coverage=92.3273657289003)
transmembrane_regions (db=TMHMM db_id=tmhmm from=217 to=239)
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ACD42_158_16
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
7191..7556
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30S ribosomal protein S13
30S ribosomal protein S13 n=2 Tax=Chromobacterium group RepID=RS13_CHRVO (db=UNIREF evalue=4.0e-37 bit_score=156.0 identity=66.38 coverage=94.2622950819672)
seg (db=Seg db_id=seg from=48 to=58)
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=5 to=116 evalue=3.0e-75 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_17
uncultured bacterium, Bacteria
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Not on your lists |
7700..8128
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rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 n=5 Tax=Coxiella burnetii RepID=RS11_COXB1 (db=UNIREF evalue=2.0e-39 bit_score=164.0 identity=65.22 coverage=79.7202797202797)
seg (db=Seg db_id=seg from=2 to=27)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=110 to=132 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
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ACD42_158_18
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
8150..8770
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30S ribosomal protein S4 n=6 Tax=Coxiella burnetii RepID=RS4_COXB1 (db=UNIREF evalue=3.0e-86 bit_score=321.0 identity=71.36 coverage=99.0338164251208)
rpsD; 30S ribosomal protein S4
rpsD; 30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=94 to=118 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
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ACD42_158_19
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
8804..9793
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rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=6 Tax=Coxiella burnetii RepID=RPOA_COXB1 (db=UNIREF evalue=3.0e-122 bit_score=441.0 identity=69.42 coverage=98.4848484848485)
seg (db=Seg db_id=seg from=249 to=262)
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ACD42_158_20
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
9803..10183
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50S ribosomal protein L17 n=11 Tax=Vibrionales RepID=RL17_VIBF1 (db=UNIREF evalue=1.0e-46 bit_score=188.0 identity=69.6 coverage=97.6377952755905)
rplQ; 50S ribosomal protein L17
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L17: ribosomal protein L17 (db=HMMTigr db_id=TIGR00059 from=6 to=117 evalue=3.3e-61 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD42_158_21
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
10406..11044
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seg (db=Seg db_id=seg from=14 to=26)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_39_13_curated
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ACD42_158_22
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
11041..12888
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serine/threonine protein kinase
seg (db=Seg db_id=seg from=201 to=212)
PROTEIN_KINASE_ATP (db=PatternScan db_id=PS00107 from=160 to=183 evalue=0.0 interpro_id=IPR017441 interpro_description=Protein kinase, ATP binding site GO=Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid phosphorylation (GO:0006468))
PROTEIN_KINASE_ST (db=PatternScan db_id=PS00108 from=276 to=288 evalue=0.0 interpro_id=IPR008271 interpro_description=Serine/threonine-protein kinase, active site GO=Molecular Function: protein serine/threonine kinase activity (GO:0004674), Biological Process: protein amino acid phosphorylation (GO:0006468))
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ACD42_158_23
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(12851..13078)
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ssb; single-strand DNA binding protein
Single-stranded DNA-binding protein n=2 Tax=Nitrosomonas RepID=SSB_NITEU (db=UNIREF evalue=5.0e-11 bit_score=70.1 identity=46.67 coverage=97.3684210526316)
seg (db=Seg db_id=seg from=44 to=62)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=75 evalue=2.9e-16 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
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