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ACD42_262

Alias: ACD42p_451867.3914.6

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD42_262_1
R_Gammaproteobacteria_42_43, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..246)
DNA (246bp) protein (82aa)
seg (db=Seg db_id=seg from=52 to=59)
Uncharacterized protein (Fragment) Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_42_43_curated
ACD42_262_2
R_Gammaproteobacteria_42_43, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(307..819)
DNA (513bp) protein (171aa)
Shikimate kinase n=1 Tax=Thioalkalivibrio sulfidophilus HL-EbGr7 RepID=AROK_THISH (db=UNIREF evalue=7.0e-40 bit_score=166.0 identity=47.88 coverage=95.3216374269006)
shikimate kinase (EC:2.7.1.71)
SHIKIMATE_KINASE (db=PatternScan db_id=PS01128 from=58 to=83 evalue=0.0 interpro_id=IPR023000 interpro_description=Shikimate kinase, conserved site)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=168 evalue=2.0e-46)
ACD42_262_3
R_Gammaproteobacteria_42_43, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(993..1136)
DNA (144bp) protein (48aa)
(db=HMMPfam db_id=PF00263 from=3 to=46 evalue=8.4e-10 interpro_id=IPR004846 interpro_description=Type II/III secretion system GO=Biological Process: protein secretion (GO:0009306))
type II and III secretion system family protein; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_42_43_curated
ACD42_262_4
R_Gammaproteobacteria_42_43, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2028..2513)
DNA (486bp) protein (162aa)
seg (db=Seg db_id=seg from=43 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_42_43_curated
ACD42_262_5
R_Gammaproteobacteria_42_43, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2510..3034)
DNA (525bp) protein (175aa)
seg (db=Seg db_id=seg from=12 to=26)
seg (db=Seg db_id=seg from=160 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
(db=HMMPfam db_id=PF05137 from=6 to=163 evalue=4.0e-09 interpro_id=IPR007813 interpro_description=Fimbrial assembly PilN)
ACD42_262_6
R_Gammaproteobacteria_42_43, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3027..3794)
DNA (768bp) protein (256aa)
(db=HMMPfam db_id=PF11104 from=54 to=140 evalue=1.5e-05)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_42_43_curated
Displaying 6 items

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