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ACD42_272

Alias: ACD42p_114397.8081.7

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD42_272_1
unknown

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comp(1..60)
DNA (60bp) protein (20aa)
1..60 - ( gc_cont=0.467)
ACD42_272_2
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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317..760
DNA (444bp) protein (148aa)
pilus biogenesis protein TapA
seg (db=Seg db_id=seg from=46 to=57)
seg (db=Seg db_id=seg from=13 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
ACD42_272_3

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899..2608
DNA (1710bp) protein (570aa)
Type II secretion system protein E n=3 Tax=Nitrosococcus RepID=Q3JEA6_NITOC (db=UNIREF evalue=3.0e-163 bit_score=579.0 identity=50.0 coverage=97.3684210526316)
type II secretion system protein E
type II secretion system protein E
T2SP_E (db=PatternScan db_id=PS00662 from=387 to=401 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
ACD42_272_4
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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2611..3840
DNA (1230bp) protein (410aa)
pilC; type IV pilus assembly protein PilC
seg (db=Seg db_id=seg from=383 to=395)
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
transmembrane_regions (db=TMHMM db_id=tmhmm from=228 to=247)
ACD42_272_5
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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3853..4251
DNA (399bp) protein (133aa)
pilus assembly protein
Pilus assembly protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z5G9_9NEIS (db=UNIREF evalue=1.0e-17 bit_score=92.0 identity=48.12 coverage=96.9924812030075)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=9 to=25)
ACD42_272_6
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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4251..4586
DNA (336bp) protein (112aa)
Type IV pilus assembly PilZ n=3 Tax=Stenotrophomonas RepID=B4SMA7_STRM5 (db=UNIREF evalue=7.0e-10 bit_score=66.6 identity=35.35 coverage=83.9285714285714)
type IV pilus assembly PilZ
(db=HMMPfam db_id=PF07238 from=28 to=86 evalue=1.1e-05 interpro_id=IPR009875 interpro_description=PilZ domain GO=Molecular Function: cyclic-di-GMP binding (GO:0035438))
type IV pilus assembly PilZ; K02676 type IV pilus assembly protein PilZ Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_39_13_curated
ACD42_272_7
R_Gammaproteobacteria_39_13, Gammaproteobacteria, Proteobacteria, Bacteria

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4610..5020
DNA (411bp) protein (137aa)
4610..5020 + ( gc_cont=0.389)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_39_13_curated
ACD42_272_8

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5017..7095
DNA (2079bp) protein (693aa)
regulatory protein (GGDEF and EAL domains)
regulatory protein (GGDEF and EAL domains)
no description (db=HMMSmart db_id=SM00052 from=434 to=679 evalue=5.6e-92 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
ACD42_272_9

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comp(7107..7805)
DNA (699bp) protein (233aa)
pilF; twitching motility protein PilF
Fimbrial biogenesis and twitching motility protein PilF n=2 Tax=Legionella longbeachae RepID=D3HSK9_LEGLN (db=UNIREF evalue=2.0e-30 bit_score=135.0 identity=38.76 coverage=84.9785407725322)
seg (db=Seg db_id=seg from=215 to=226)
type_IV_pilW: type IV pilus biogenesis/s (db=HMMTigr db_id=TIGR02521 from=8 to=223 evalue=1.8e-34 interpro_id=IPR013360 interpro_description=Pilus biogenesis/stability type IV, PilW)
ACD42_272_10

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comp(7814..8113)
DNA (300bp) protein (100aa)
Bacterial type II and III secretion system protein n=1 Tax=Beggiatoa sp. PS RepID=A7BUG3_9GAMM (db=UNIREF evalue=1.0e-16 bit_score=89.0 identity=51.28 coverage=77.0)
pilQ; type II/III pilus secretin
(db=HMMPfam db_id=PF00263 from=10 to=89 evalue=3.9e-24 interpro_id=IPR004846 interpro_description=Type II/III secretion system GO=Biological Process: protein secretion (GO:0009306))
Bacterial type II and III secretion system protein {ECO:0000313|EMBL:EKD76960.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 10 items

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