ggKbase home page

ACD43_33

Alias: ACD43_67449.10415.6

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD43_33_1

Not on your lists

1..408
DNA (408bp) protein (136aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=118)
ACD43_33_2

Not on your lists

359..979
DNA (621bp) protein (207aa)
methyltransferase GidB
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=9 to=168 evalue=1.6e-43)
GidB (db=HMMPfam db_id=PF02527 from=12 to=180 evalue=4.2e-42 interpro_id=IPR003682 interpro_description=rRNA small subunit methyltransferase G GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA methyltransferase activity (GO:0008649))
gidB: 16S rRNA methyltransferase GidB (db=HMMTigr db_id=TIGR00138 from=16 to=200 evalue=2.4e-37 interpro_id=IPR003682 interpro_description=rRNA small subunit methyltransferase G GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA methyltransferase activity (GO:0008649))
ACD43_33_3

Not on your lists

1004..2038
DNA (1035bp) protein (345aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=328 to=341)
seg (db=Seg db_id=seg from=129 to=144)
seg (db=Seg db_id=seg from=75 to=86)
ACD43_33_4

Not on your lists

2149..2814
DNA (666bp) protein (222aa)
2149..2814 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD76034.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_33_5

Not on your lists

comp(2822..4021)
DNA (1200bp) protein (400aa)
AAA ATPase, central domain protein n=5 Tax=Dehalococcoides RepID=A5FQ30_DEHSB (db=UNIREF evalue=5.0e-113 bit_score=411.0 identity=50.95 coverage=98.0)
recombination factor protein RarA
recombination factor protein RarA
WERNER HELICASE INTERACTING PROTEIN (db=HMMPanther db_id=PTHR13779:SF1 from=29 to=395 evalue=5.7e-166)
ACD43_33_6

Not on your lists

comp(4047..4664)
DNA (618bp) protein (206aa)
O-methyltransferase n=1 Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5PAQ4_9MYCO (db=UNIREF evalue=8.0e-18 bit_score=93.6 identity=38.26 coverage=68.4466019417476)
methyltransferase
seg (db=Seg db_id=seg from=66 to=72)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=5 to=196 evalue=3.8e-31)
ACD43_33_7

Not on your lists

comp(4667..5704)
DNA (1038bp) protein (346aa)
radical SAM enzyme, Cfr family
seg (db=Seg db_id=seg from=333 to=344)
Predicted radical SAM enzyme, Cfr type (db=HMMPIR db_id=PIRSF006004 from=1 to=342 evalue=1.5e-89 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
TIGR00048: radical SAM enzyme, Cfr family (db=HMMTigr db_id=TIGR00048 from=1 to=345 evalue=4.7e-72 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
ACD43_33_8

Not on your lists

comp(5741..7795)
DNA (2055bp) protein (685aa)
phosphoenolpyruvate synthase
seg (db=Seg db_id=seg from=564 to=576)
PPDK_N (db=HMMPfam db_id=PF01326 from=50 to=239 evalue=2.1e-33 interpro_id=IPR002192 interpro_description=Pyruvate phosphate dikinase, PEP/pyruvate-binding GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: kinase activity (GO:0016301), Biological Process: phosphorylation (GO:0016310))
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=1 to=237 evalue=8.5e-31)
ACD43_33_9

Not on your lists

comp(7785..8687)
DNA (903bp) protein (301aa)
seg (db=Seg db_id=seg from=5 to=20)
seg (db=Seg db_id=seg from=286 to=296)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKD76039.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_33_10

Not on your lists

comp(9071..10243)
DNA (1173bp) protein (391aa)
hypothetical protein (db=KEGG evalue=5.0e-08 bit_score=62.8 identity=41.77 coverage=19.1815856777494)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
seg (db=Seg db_id=seg from=85 to=99)
ACD43_33_11

Not on your lists

10323..10448
DNA (126bp) protein (42aa)
10323..10448 + (rbs_motif=ATA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD76033.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 11 items

View Taxonomy