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ACD43_47

Alias: ACD43_276569.14171.7

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD43_47_1

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1..297
DNA (297bp) protein (99aa)
OmpA/MotB domain protein (db=KEGG evalue=2.0e-08 bit_score=61.2 identity=42.25 coverage=69.6969696969697)
OmpA/MotB domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVL3_HALO1 (db=UNIREF evalue=2.0e-08 bit_score=61.2 identity=42.25 coverage=69.6969696969697)
OmpA/MotB protein {ECO:0000313|EMBL:EKD76343.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_47_2
R_OD1_48_18, Parcubacteria, Bacteria

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263..1081
DNA (819bp) protein (273aa)
binding-protein-dependent transport system inner membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=224)
ACD43_47_3

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1085..1897
DNA (813bp) protein (271aa)
ABC transporter related n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSX9_9FIRM (db=UNIREF evalue=9.0e-74 bit_score=280.0 identity=50.0 coverage=94.4649446494465)
ABC transporter
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=7 to=254 evalue=3.6e-93)
SULFONATE / NITRATE ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF51 from=7 to=254 evalue=3.6e-93)
ACD43_47_4

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2190..3464
DNA (1275bp) protein (425aa)
putative HtrA2 peptidase (EC:3.4.21.108)
seg (db=Seg db_id=seg from=76 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=55 to=66)
ACD43_47_5

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comp(3473..5419)
DNA (1947bp) protein (649aa)
seg (db=Seg db_id=seg from=27 to=40)
seg (db=Seg db_id=seg from=186 to=194)
Uncharacterized protein {ECO:0000313|EMBL:EKD76342.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_47_6
ACD43, ACD43, ACD43, ACD43, Parcubacteria, Bacteria

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comp(5409..5657)
DNA (249bp) protein (83aa)
seg (db=Seg db_id=seg from=35 to=48)
ACD43_47_7

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5766..6251
DNA (486bp) protein (162aa)
Spo0M (db=HMMPfam db_id=PF07070 from=4 to=150 evalue=5.7e-11 interpro_id=IPR009776 interpro_description=Sporulation stage 0, protein M)
Uncharacterized protein {ECO:0000313|EMBL:EKD76337.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_47_8

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6334..6618
DNA (285bp) protein (95aa)
Histone family protein DNA-binding protein n=1 Tax=bacterium Ellin514 RepID=B9XJ11_9BACT (db=UNIREF evalue=9.0e-20 bit_score=99.0 identity=53.19 coverage=95.7894736842105)
histone family protein DNA-binding protein
Bac_DNA_binding (db=HMMPfam db_id=PF00216 from=5 to=93 evalue=7.4e-27 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
IHF-like DNA-binding proteins (db=superfamily db_id=SSF47729 from=5 to=93 evalue=1.0e-24 interpro_id=IPR010992 interpro_description=IHF-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD43_47_9

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6748..7332
DNA (585bp) protein (195aa)
seg (db=Seg db_id=seg from=6 to=24)
TRF2 (db=HMMPfam db_id=PF11611 from=51 to=177 evalue=2.1e-08 interpro_id=IPR021652 interpro_description=Telomeric repeat-binding factor 2)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD76339.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_47_10

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comp(7604..8440)
DNA (837bp) protein (279aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=33)
seg (db=Seg db_id=seg from=240 to=272)
seg (db=Seg db_id=seg from=104 to=136)
seg (db=Seg db_id=seg from=48 to=95)
ACD43_47_11

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8494..9195
DNA (702bp) protein (234aa)
metalloendopeptidase-like membrane protein
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=33 to=223 evalue=1.3e-11 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
Peptidase_M23 (db=HMMPfam db_id=PF01551 from=97 to=196 evalue=1.5e-11 interpro_id=IPR016047 interpro_description=Peptidase M23)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=17 evalue=5.0)
ACD43_47_12

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9463..10134
DNA (672bp) protein (224aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=99 to=119)
Uncharacterized protein {ECO:0000313|EMBL:EKD76331.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_47_13

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10118..11758
DNA (1641bp) protein (547aa)
prenyltransferase/squalene oxidase (db=KEGG evalue=8.0e-16 bit_score=89.0 identity=35.51 coverage=41.3162705667276)
seg (db=Seg db_id=seg from=225 to=236)
seg (db=Seg db_id=seg from=15 to=28)
seg (db=Seg db_id=seg from=372 to=380)
ACD43_47_14

Not on your lists

11776..12363
DNA (588bp) protein (196aa)
hypothetical protein
Superoxide dismutase, Mn/Fe specific (db=HMMPIR db_id=PIRSF000349 from=1 to=195 evalue=4.4e-27 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
Fe,Mn superoxide dismutase (SOD), C-terminal domain (db=superfamily db_id=SSF54719 from=85 to=194 evalue=2.5e-25 interpro_id=IPR019832 interpro_description=Manganese/iron superoxide dismutase, C-terminal GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
SUPEROXIDE DISMUTASE [FE] (db=HMMPanther db_id=PTHR11404:SF6 from=31 to=195 evalue=8.2e-24)
ACD43_47_15

Not on your lists

12474..13589
DNA (1116bp) protein (372aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
seg (db=Seg db_id=seg from=126 to=143)
TWO COMPONENT SENSOR HISTIDINE KINASE (PHOR) (db=HMMPanther db_id=PTHR23283:SF34 from=18 to=366 evalue=5.6e-83)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=18 to=366 evalue=5.6e-83)
ACD43_47_16

Not on your lists

13601..13996
DNA (396bp) protein (132aa)
response regulator receiver protein
seg (db=Seg db_id=seg from=71 to=82)
CheY-like (db=superfamily db_id=SSF52172 from=5 to=128 evalue=6.6e-32 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=8 to=123 evalue=1.4e-27 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD43_47_17

Not on your lists

13989..14204
DNA (216bp) protein (72aa)
13989..14204 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD76336.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 17 items

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