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ACD43_51

Alias: ACD43_13103.2696.9

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD43_51_1

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2..622
DNA (621bp) protein (207aa)
PEBP family protein
no description (db=Gene3D db_id=G3DSA:3.90.280.10 from=64 to=204 evalue=2.8e-36 interpro_id=IPR008914 interpro_description=Phosphatidylethanolamine-binding protein PEBP)
PEBP-like (db=superfamily db_id=SSF49777 from=63 to=204 evalue=3.7e-35 interpro_id=IPR008914 interpro_description=Phosphatidylethanolamine-binding protein PEBP)
PBP (db=HMMPfam db_id=PF01161 from=74 to=204 evalue=7.6e-28 interpro_id=IPR008914 interpro_description=Phosphatidylethanolamine-binding protein PEBP)
ACD43_51_2

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774..1247
DNA (474bp) protein (158aa)
774..1247 + (rbs_motif=ATA rbs_spacer=14bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD76613.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_51_3

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1270..1431
DNA (162bp) protein (54aa)
coiled-coil (db=Coil db_id=coil from=10 to=42 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD76614.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_51_4

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comp(1444..2076)
DNA (633bp) protein (211aa)
RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily
coiled-coil (db=Coil db_id=coil from=174 to=195 evalue=NA)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=32 to=192 evalue=7.8e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=11 to=121 evalue=5.3e-21 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD43_51_5

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comp(2087..2401)
DNA (315bp) protein (105aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
Uncharacterized protein {ECO:0000313|EMBL:EKD76616.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_51_6

Not on your lists

2434..2562
DNA (129bp) protein (43aa)
seg (db=Seg db_id=seg from=22 to=42)
Uncharacterized protein {ECO:0000313|EMBL:EKD76617.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_51_7

Not on your lists

2567..2728
DNA (162bp) protein (54aa)
helicase
ATPase n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017429A0 (db=UNIREF evalue=2.0e-10 bit_score=67.8 identity=59.26 coverage=98.1481481481482)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=54 evalue=2.2e-12)
IstB (db=HMMPfam db_id=PF01695 from=2 to=45 evalue=6.5e-06 interpro_id=IPR002611 interpro_description=IstB-like ATP-binding protein GO=Molecular Function: ATP binding (GO:0005524))
Displaying 7 items

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