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ACD45_107

Alias: ACD45_34366.16151.10

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD45_107_1

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comp(59..646)
DNA (588bp) protein (196aa)
ribonuclease HII (EC:3.1.26.4)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=10 to=195 evalue=1.1e-66 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
RNase_HII (db=HMMPfam db_id=PF01351 from=13 to=190 evalue=1.5e-52 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
RIBONUCLEASE HII (db=HMMPanther db_id=PTHR10954 from=1 to=191 evalue=9.1e-50 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
ACD45_107_2

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854..1876
DNA (1023bp) protein (341aa)
seg (db=Seg db_id=seg from=176 to=187)
Uncharacterized protein {ECO:0000313|EMBL:EKD73237.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD45_107_3

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comp(1860..3113)
DNA (1254bp) protein (418aa)
Lipid-A-disaccharide synthase n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U3P1_MARAV (db=UNIREF evalue=2.0e-112 bit_score=409.0 identity=53.48 coverage=89.2344497607656)
lipid-A-disaccharide synthase
lipid-A-disaccharide synthase
seg (db=Seg db_id=seg from=5 to=12)
ACD45_107_4

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comp(3058..3390)
DNA (333bp) protein (111aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H151_METFK (db=UNIREF evalue=1.0e-29 bit_score=132.0 identity=48.18 coverage=98.1981981981982)
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Trimeric LpxA-like enzymes (db=superfamily db_id=SSF51161 from=2 to=110 evalue=9.1e-24 interpro_id=IPR011004 interpro_description=Trimeric LpxA-like GO=Molecular Function: transferase activity (GO:0016740))
no description (db=Gene3D db_id=G3DSA:1.20.1180.10 from=45 to=110 evalue=3.8e-21)
ACD45_107_5

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comp(3867..4310)
DNA (444bp) protein (148aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase
fabZ: beta-hydroxyacyl-(acyl-carrier-protein (db=HMMTigr db_id=TIGR01750 from=5 to=145 evalue=1.6e-83 interpro_id=IPR010084 interpro_description=Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: fatty acid biosynthetic process (GO:0006633), Molecular Function: hydro-lyase activity (GO:0016836))
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=6 to=142 evalue=5.4e-53)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=2 to=147 evalue=1.6e-48)
ACD45_107_6

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comp(4307..5365)
DNA (1059bp) protein (353aa)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase n=1 Tax=Marinobacter algicola DG893 RepID=A6EUT1_9ALTE (db=UNIREF evalue=2.0e-86 bit_score=323.0 identity=48.41 coverage=97.1671388101983)
coiled-coil (db=Coil db_id=coil from=329 to=350 evalue=NA)
ACD45_107_7

Not on your lists

comp(5486..6001)
DNA (516bp) protein (172aa)
skp; chaperone protein skp
coiled-coil (db=Coil db_id=coil from=61 to=82 evalue=NA)
OmpH (db=HMMPfam db_id=PF03938 from=17 to=169 evalue=1.5e-34 interpro_id=IPR005632 interpro_description=Outer membrane chaperone Skp (OmpH) GO=Molecular Function: protein binding (GO:0005515))
OmpH-like (db=superfamily db_id=SSF111384 from=26 to=170 evalue=3.3e-29 interpro_id=IPR005632 interpro_description=Outer membrane chaperone Skp (OmpH) GO=Molecular Function: protein binding (GO:0005515))
ACD45_107_8

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comp(6131..8422)
DNA (2292bp) protein (764aa)
outer membrane protein assembly complex, YaeT protein
outer membrane protein assembly complex, YaeT protein
Outer membrane protein assembly complex, YaeT protein n=1 Tax=Nitrosococcus halophilus Nc4 RepID=D5BVW9_NITHN (db=UNIREF evalue=6.0e-175 bit_score=618.0 identity=42.54 coverage=96.8586387434555)
OM_YaeT: outer membrane protein assembly com (db=HMMTigr db_id=TIGR03303 from=14 to=762 evalue=8.3e-285 interpro_id=IPR016474 interpro_description=Outer membrane assembly protein, YaeT)
ACD45_107_9

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comp(8550..9371)
DNA (822bp) protein (274aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Bermanella marisrubri RepID=Q1N1W9_9GAMM (db=UNIREF evalue=1.0e-45 bit_score=187.0 identity=43.53 coverage=95.985401459854)
transmembrane_regions (db=TMHMM db_id=tmhmm from=199 to=221)
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=192)
ACD45_107_10

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comp(9364..9657)
DNA (294bp) protein (98aa)
UDP pyrophosphate synthase
UPP_SYNTHASE (db=PatternScan db_id=PS01066 from=31 to=48 evalue=0.0 interpro_id=IPR018520 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR10291 from=1 to=89 evalue=1.9e-34 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
uppS: di-trans,poly-cis-decaprenylcistransfe (db=HMMTigr db_id=TIGR00055 from=2 to=85 evalue=8.1e-33 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
ACD45_107_11

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comp(9660..10136)
DNA (477bp) protein (159aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31)
seg (db=Seg db_id=seg from=126 to=142)
uppS: di-trans,poly-cis-decaprenylcistransfe (db=HMMTigr db_id=TIGR00055 from=6 to=125 evalue=2.5e-59 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR10291 from=6 to=125 evalue=7.2e-49 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
ACD45_107_12

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comp(10136..10693)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=Methylococcus capsulatus RepID=RRF_METCA (db=UNIREF evalue=6.0e-65 bit_score=249.0 identity=66.67 coverage=93.010752688172)
frr; ribosome recycling factor
coiled-coil (db=Coil db_id=coil from=114 to=167 evalue=NA)
frr: ribosome recycling factor (db=HMMTigr db_id=TIGR00496 from=10 to=185 evalue=1.1e-86 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
ACD45_107_13

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comp(10699..11448)
DNA (750bp) protein (250aa)
Uridylate kinase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQY3_9GAMM (db=UNIREF evalue=5.0e-78 bit_score=293.0 identity=58.09 coverage=96.0)
uridylate kinase
pyrH_bact: UMP kinase (db=HMMTigr db_id=TIGR02075 from=15 to=246 evalue=2.8e-120 interpro_id=IPR015963 interpro_description=Uridylate kinase, bacteria GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: UMP kinase activity (GO:0033862))
Uridylate kinase (db=HMMPIR db_id=PIRSF005650 from=13 to=247 evalue=1.6e-105 interpro_id=IPR011817 interpro_description=Uridylate kinase GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: uridylate kinase activity (GO:0009041))
ACD45_107_14

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comp(11491..12375)
DNA (885bp) protein (295aa)
Elongation factor Ts n=2 Tax=Legionella longbeachae RepID=D3HT54_LEGLN (db=UNIREF evalue=1.0e-93 bit_score=346.0 identity=57.19 coverage=98.3050847457627)
translation elongation factor Ts
translation elongation factor Ts
coiled-coil (db=Coil db_id=coil from=23 to=44 evalue=NA)
ACD45_107_15

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comp(12394..13179)
DNA (786bp) protein (262aa)
Ribosomal protein S2 n=1 Tax=Allochromatium vinosum DSM 180 RepID=D3RV34_ALLVD (db=UNIREF evalue=8.0e-94 bit_score=346.0 identity=66.39 coverage=91.9847328244275)
30S ribosomal protein S2
30S ribosomal protein S2
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=7 to=18 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD45_107_16

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13357..14118
DNA (762bp) protein (254aa)
Methionine aminopeptidase n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9W4_9GAMM (db=UNIREF evalue=2.0e-110 bit_score=402.0 identity=75.9 coverage=97.6377952755905)
map; methionine aminopeptidase (EC:3.4.11.18)
map; methionine aminopeptidase (EC:3.4.11.18)
MAP_1 (db=PatternScan db_id=PS00680 from=165 to=183 evalue=0.0 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
ACD45_107_17

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14134..15411
DNA (1278bp) protein (426aa)
conserved exported protein of unknown function rbh
conserved exported protein of unknown function rbh
Phosphatidylcholine hydrolyzing phospholipase n=5 Tax=Legionella pneumophila RepID=D5T8R3_LEGPN (db=UNIREF evalue=3.0e-99 bit_score=365.0 identity=45.82 coverage=85.9154929577465)
seg (db=Seg db_id=seg from=54 to=65)
ACD45_107_18

Not on your lists

15467..16045
DNA (579bp) protein (193aa)
sodB1; superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase n=2 Tax=Chromobacterium group RepID=B9Z2N2_9NEIS (db=UNIREF evalue=2.0e-82 bit_score=307.0 identity=74.21 coverage=97.9274611398964)
SOD_MN (db=PatternScan db_id=PS00088 from=157 to=164 evalue=0.0 interpro_id=IPR019833 interpro_description=Manganese/iron superoxide dismutase, binding site GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
Superoxide dismutase, Mn/Fe specific (db=HMMPIR db_id=PIRSF000349 from=1 to=191 evalue=6.5e-119 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
Displaying 18 items

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