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ACD13_31

Alias: ACD13_15104.16276.20

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_31_1

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comp(3..491)
DNA (489bp) protein (163aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Micromonospora sp. L5 RepID=D3C7J9_9ACTO (db=UNIREF evalue=1.0e-12 bit_score=75.5 identity=34.97 coverage=95.7055214723926)
transmembrane_regions (db=TMHMM db_id=tmhmm from=133 to=155)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
ACD13_31_2

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561..827
DNA (267bp) protein (89aa)
hypothetical protein
DUF156 (db=HMMPfam db_id=PF02583 from=6 to=87 evalue=7.8e-22 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
hypothetical protein alias=ACD13_C00031G00002,ACD13_15104.16276.20G0002,ACD13_15104.16276.20_2 id=7116 tax=ACD13 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=OP11 organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:EKE13297.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_3

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842..1198
DNA (357bp) protein (119aa)
Copper-exporting ATPase (EC:3.6.3.4)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Cupredoxins (db=superfamily db_id=SSF49503 from=15 to=117 evalue=1.0e-16 interpro_id=IPR008972 interpro_description=Cupredoxin)
hypothetical protein alias=ACD13_C00031G00003,ACD13_15104.16276.20G0003,ACD13_15104.16276.20_3 id=7127 tax=ACD13 species=Lactobacillus salivarius genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes organism_group=OP11 organism_desc=OP11
domain not certain Jill Banfield (11/15/12)
ACD13_31_4

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1201..3336
DNA (2136bp) protein (712aa)
heavy metal translocating P-type ATPase (EC:3.6.3.4)
heavy metal translocating P-type ATPase (EC:3.6.3.4)
Cation-transporting ATPase n=2 Tax=Nostocaceae RepID=Q8YWI6_ANASP (db=UNIREF evalue=3.0e-180 bit_score=635.0 identity=47.47 coverage=98.876404494382)
seg (db=Seg db_id=seg from=102 to=114)
ACD13_31_5

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3397..3717
DNA (321bp) protein (107aa)
thioredoxin
thioredoxin: thioredoxin (db=HMMTigr db_id=TIGR01068 from=6 to=106 evalue=6.4e-51 interpro_id=IPR005746 interpro_description=Thioredoxin GO=Biological Process: glycerol ether metabolic process (GO:0006662), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=7 to=106 evalue=2.8e-37 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
THIOREDOXIN-RELATED (db=HMMPanther db_id=PTHR10438 from=12 to=106 evalue=9.8e-35 interpro_id=IPR015467 interpro_description=Thioredoxin, core GO=Biological Process: cell redox homeostasis (GO:0045454))
ACD13_31_6

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3734..4057
DNA (324bp) protein (108aa)
seg (db=Seg db_id=seg from=42 to=107)
Uncharacterized protein {ECO:0000313|EMBL:EKE13301.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_7

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4663..5127
DNA (465bp) protein (155aa)
thioredoxin-disulfide reductase (EC:1.8.1.9)
PNDRDTASEII (db=FPrintScan db_id=PR00469 from=76 to=97 evalue=7.4e-23 interpro_id=IPR000103 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
PNDRDTASEII (db=FPrintScan db_id=PR00469 from=38 to=54 evalue=7.4e-23 interpro_id=IPR000103 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
PNDRDTASEII (db=FPrintScan db_id=PR00469 from=109 to=127 evalue=7.4e-23 interpro_id=IPR000103 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD13_31_8

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5168..5977
DNA (810bp) protein (270aa)
Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q096V0_STIAU (db=UNIREF evalue=1.0e-12 bit_score=77.0 identity=28.72 coverage=58.5185185185185)
DSBA oxidoreductase
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=44 to=59)
ACD13_31_9

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6005..6808
DNA (804bp) protein (268aa)
metal dependent phosphohydrolase
HD (db=HMMPfam db_id=PF01966 from=60 to=179 evalue=1.4e-07 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
no description (db=HMMSmart db_id=SM00471 from=53 to=189 evalue=0.00028 interpro_id=IPR003607 interpro_description=Metal-dependent phosphohydrolase, HD domain GO=Molecular Function: catalytic activity (GO:0003824))
Uncharacterized protein {ECO:0000313|EMBL:EKE13289.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_10

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comp(6805..7377)
DNA (573bp) protein (191aa)
tRNA/rRNA methyltransferase (SpoU)
alpha/beta knot (db=superfamily db_id=SSF75217 from=9 to=181 evalue=6.4e-31)
SpoU_methylase (db=HMMPfam db_id=PF00588 from=31 to=174 evalue=5.3e-29 interpro_id=IPR001537 interpro_description=tRNA/rRNA methyltransferase, SpoU GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
no description (db=Gene3D db_id=G3DSA:3.40.1280.10 from=13 to=176 evalue=7.9e-28)
ACD13_31_11

Not on your lists

comp(7358..7573)
DNA (216bp) protein (72aa)
7358..7573 - (rbs_motif=ATA rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE13291.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_12

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comp(7578..7721)
DNA (144bp) protein (48aa)
7578..7721 - (rbs_motif=TAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE13292.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_13

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comp(7759..8403)
DNA (645bp) protein (215aa)
Adenylate kinase n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FHN0_9RHOB (db=UNIREF evalue=1.0e-14 bit_score=83.2 identity=35.0 coverage=67.906976744186)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] (db=KEGG evalue=2.0e-13 bit_score=79.3 identity=30.05 coverage=77.6744186046512)
seg (db=Seg db_id=seg from=8 to=19)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=4 to=213 evalue=1.6e-25)
ACD13_31_14

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8696..9208
DNA (513bp) protein (171aa)
seg (db=Seg db_id=seg from=50 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKE13294.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_15

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9208..9309
DNA (102bp) protein (34aa)
9208..9309 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE13295.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_16

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9960..10247
DNA (288bp) protein (96aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=5 to=22)
ACD13_31_17

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comp(10423..10737)
DNA (315bp) protein (105aa)
site-specific recombinase, DNA invertase Pin
Uncharacterized protein {ECO:0000313|EMBL:EKE13278.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD13_C00031G00017,ACD13_15104.16276.20G0017,ACD13_15104.16276.20_17 id=7120 tax=ACD13 species=Catenulispora acidiphila genus=Catenulispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OP11 organism_desc=OP11
ACD13_31_18

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comp(10923..11627)
DNA (705bp) protein (235aa)
ABC transporter, ATPase subunit
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=142 to=156 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=2 to=221 evalue=1.3e-96)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=221 evalue=1.3e-96)
ACD13_31_19

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comp(11632..12906)
DNA (1275bp) protein (425aa)
FeeE n=1 Tax=uncultured bacterium RepID=Q8KP05_9BACT (db=UNIREF evalue=7.0e-62 bit_score=241.0 identity=37.68 coverage=98.3529411764706)
ABC transporter permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=385 to=407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=348 to=370)
ACD13_31_20

Not on your lists

comp(12984..13928)
DNA (945bp) protein (315aa)
RND family efflux transporter MFP subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
seg (db=Seg db_id=seg from=266 to=279)
seg (db=Seg db_id=seg from=147 to=156)
ACD13_31_21

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comp(13930..14367)
DNA (438bp) protein (146aa)
putative HTH transcriptional regulator
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=139 evalue=5.5e-21)
MarR (db=HMMPfam db_id=PF01047 from=34 to=90 evalue=1.1e-11 interpro_id=IPR000835 interpro_description=HTH transcriptional regulator, MarR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=33 to=106 evalue=6.6e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD13_31_22

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14560..14964
DNA (405bp) protein (135aa)
RNA-binding protein
seg (db=Seg db_id=seg from=105 to=133)
RNA-binding domain, RBD (db=superfamily db_id=SSF54928 from=2 to=113 evalue=5.9e-33)
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=119 evalue=3.5e-31 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD13_31_23

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14927..15187
DNA (261bp) protein (87aa)
coiled-coil (db=Coil db_id=coil from=61 to=82 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE13284.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_31_24

Not on your lists

15245..15811
DNA (567bp) protein (189aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=122 to=144)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
ACD13_31_25

Not on your lists

15846..16133
DNA (288bp) protein (96aa)
15846..16133 + (rbs_motif=TAA rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE13286.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 25 items

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