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ACD46_101

Alias: ACD46_26500.9326.9

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD46_101_1

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comp(2..469)
DNA (468bp) protein (156aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
ACD46_101_2

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comp(485..709)
DNA (225bp) protein (75aa)
30S ribosomal protein S18
30S ribosomal protein S18 n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=RS18_BUCAP (db=UNIREF evalue=2.0e-23 bit_score=111.0 identity=68.92 coverage=97.3333333333333)
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=4 to=73 evalue=1.4e-30 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479 from=4 to=73 evalue=1.2e-28 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD46_101_3

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comp(735..1187)
DNA (453bp) protein (151aa)
30S ribosomal protein S6
30S ribosomal protein S6 n=1 Tax=Marinobacter aquaeolei VT8 RepID=RS6_MARAV (db=UNIREF evalue=9.0e-42 bit_score=172.0 identity=59.44 coverage=90.0662251655629)
no description (db=Gene3D db_id=G3DSA:3.30.70.60 from=6 to=110 evalue=4.2e-34 interpro_id=IPR014717 interpro_description=Translation elongation factor EF1B/ribosomal protein S6)
Ribosomal protein S6 (db=superfamily db_id=SSF54995 from=7 to=110 evalue=7.2e-34 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD46_101_4

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2023..3033
DNA (1011bp) protein (337aa)
coiled-coil (db=Coil db_id=coil from=277 to=298 evalue=NA)
Ankyrin repeat (db=superfamily db_id=SSF48403 from=14 to=191 evalue=4.4e-13 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=45 to=171 evalue=1.7e-07 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ANKYRIN REPEAT-CONTAINING (db=HMMPanther db_id=PTHR18958 from=1 to=194 evalue=7.2e-07)
ACD46_101_5

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comp(3947..4174)
DNA (228bp) protein (76aa)
seg (db=Seg db_id=seg from=29 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=31)
Uncharacterized protein {ECO:0000313|EMBL:EKD71134.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD46_101_6

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5264..5605
DNA (342bp) protein (114aa)
5264..5605 + (rbs_motif=AGxAG rbs_spacer=3-4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD71127.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD46_101_7

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comp(5612..7093)
DNA (1482bp) protein (494aa)
Diguanylate kinase (EC:2.7.7.65) rbh
Diguanylate kinase (EC:2.7.7.65) rbh
Sensory box/GGDEF family n=3 Tax=Legionella pneumophila RepID=Q5ZWM8_LEGPH (db=UNIREF evalue=4.0e-153 bit_score=545.0 identity=56.39 coverage=97.7732793522267)
seg (db=Seg db_id=seg from=37 to=56)
ACD46_101_8

Not on your lists

comp(7086..7628)
DNA (543bp) protein (181aa)
guanylate cyclase
no description (db=Gene3D db_id=G3DSA:3.90.1520.10 from=1 to=180 evalue=1.7e-55)
Ligand-binding domain in the NO signalling and Golgi transport (db=superfamily db_id=SSF111126 from=1 to=180 evalue=6.3e-50 interpro_id=IPR011644 interpro_description=Haem NO binding GO=Molecular Function: guanylate cyclase activity (GO:0004383), Biological Process: cGMP biosynthetic process (GO:0006182), Molecular Function: heme binding (GO:0020037))
HNOB (db=HMMPfam db_id=PF07700 from=1 to=162 evalue=1.7e-39 interpro_id=IPR011644 interpro_description=Haem NO binding GO=Molecular Function: guanylate cyclase activity (GO:0004383), Biological Process: cGMP biosynthetic process (GO:0006182), Molecular Function: heme binding (GO:0020037))
ACD46_101_9

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comp(8031..9248)
DNA (1218bp) protein (406aa)
malate dehydrogenase (EC:1.1.1.40)
malate dehydrogenase (EC:1.1.1.40)
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)) n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPC2_THISH (db=UNIREF evalue=1.0e-141 bit_score=506.0 identity=67.08 coverage=99.0147783251232)
seg (db=Seg db_id=seg from=72 to=87)
Not to be confused with malate dehydrogenase of TCA Malic enzyme converts malate to pyruvate, releases CO2 and NADPH. Might be used to generate NADPH on substrates with low flux thru PP. Could also with MDH and pyruvate carboxylase would catalyze an ATP dependent metabolic cycle converting NADH to NADPH without a loss of carbon. (sauer, 2005) kelly wrighton (11/15/12)
ACD46_101_10

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comp(9258..9362)
DNA (105bp) protein (35aa)
9258..9362 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD71126.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 10 items

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