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ACD46_126

Alias: ACD46_21948.19395.10

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD46_126_1

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comp(3..176)
DNA (174bp) protein (58aa)
3..176 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD71365.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD46_126_2

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comp(187..951)
DNA (765bp) protein (255aa)
Ankyrin repeat protein
Ankyrin repeat (db=superfamily db_id=SSF48403 from=169 to=246 evalue=5.3e-15 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
no description (db=Gene3D db_id=G3DSA:1.25.40.20 from=162 to=244 evalue=8.5e-11 interpro_id=IPR020683 interpro_description=Ankyrin repeat-containing domain)
ANKYRIN REPEAT-CONTAINING (db=HMMPanther db_id=PTHR18958 from=175 to=244 evalue=3.6e-08)
ACD46_126_3

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comp(2355..3131)
DNA (777bp) protein (259aa)
RNI-like (db=superfamily db_id=SSF52047 from=20 to=214 evalue=1.9e-18)
no description (db=Gene3D db_id=G3DSA:3.80.10.10 from=20 to=180 evalue=6.8e-15)
NALP (NACHT, LEUCINE RICH REPEAT AND PYRIN DOMAIN CONTAINING)-RELATED (db=HMMPanther db_id=PTHR13824 from=20 to=180 evalue=1.4e-05)
LRR_1 (db=HMMPfam db_id=PF00560 from=101 to=117 evalue=0.14 interpro_id=IPR001611 interpro_description=Leucine-rich repeat GO=Molecular Function: protein binding (GO:0005515))
ACD46_126_4

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3254..4315
DNA (1062bp) protein (354aa)
Aminodeoxychorismate lyase n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H168_METFK (db=UNIREF evalue=5.0e-75 bit_score=285.0 identity=46.25 coverage=88.7005649717514)
aminodeoxychorismate lyase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
YceG (db=HMMPfam db_id=PF02618 from=40 to=326 evalue=3.1e-91 interpro_id=IPR003770 interpro_description=Uncharacterised protein family YceG-like)
ACD46_126_5

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4319..4957
DNA (639bp) protein (213aa)
Thymidylate kinase n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KD33_9GAMM (db=UNIREF evalue=1.0e-56 bit_score=222.0 identity=53.14 coverage=95.7746478873239)
thymidylate kinase (EC:2.7.4.9)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=209 evalue=3.7e-66)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=209 evalue=2.4e-64)
ACD46_126_6

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4954..5934
DNA (981bp) protein (327aa)
DNA polymerase III, delta prime subunit
seg (db=Seg db_id=seg from=248 to=266)
holB: DNA polymerase III, delta' subunit (db=HMMTigr db_id=TIGR00678 from=10 to=200 evalue=7.0e-82 interpro_id=IPR004622 interpro_description=DNA polymerase III, delta prime subunit GO=Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=206 evalue=5.7e-55)
ACD46_126_7
R_Gammaproteobacteria_45_12, Gammaproteobacteria, Proteobacteria, Bacteria

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5931..6344
DNA (414bp) protein (138aa)
ycfH; putative metallodependent hydrolase
seg (db=Seg db_id=seg from=122 to=134)
TATD_1 (db=PatternScan db_id=PS01137 from=3 to=11 evalue=0.0 interpro_id=IPR018228 interpro_description=Deoxyribonuclease, TatD-related, conserved site GO=Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888))
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=1 to=124 evalue=1.0e-30)
ACD46_126_8

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6386..6751
DNA (366bp) protein (122aa)
TatD-related deoxyribonuclease n=4 Tax=Cupriavidus RepID=Q471X6_RALEJ (db=UNIREF evalue=5.0e-45 bit_score=182.0 identity=71.93 coverage=92.6229508196721)
TatD-related deoxyribonuclease
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=1 to=114 evalue=1.1e-40)
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=1 to=113 evalue=2.4e-40)
ACD46_126_9

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6738..7994
DNA (1257bp) protein (419aa)
lolC; Lipoprotein-releasing system transmembrane protein lolC
lolC; Lipoprotein-releasing system transmembrane protein lolC
Outer membrane-specific lipoprotein transporter subunit ; membrane component of ABC superfamily n=2 Tax=Legionella longbeachae RepID=D3HPW4_LEGLN (db=UNIREF evalue=5.0e-106 bit_score=388.0 identity=53.61 coverage=98.5680190930788)
transmembrane_regions (db=TMHMM db_id=tmhmm from=323 to=345)
ACD46_126_10

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7987..8667
DNA (681bp) protein (227aa)
lipoprotein releasing system, ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=146 to=160 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
LolD_lipo_ex: lipoprotein releasing syst (db=HMMTigr db_id=TIGR02211 from=5 to=225 evalue=2.2e-125 interpro_id=IPR011924 interpro_description=Lipoprotein releasing system, ATP-binding protein GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=6 to=224 evalue=5.0e-96)
ACD46_126_11

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8922..9326
DNA (405bp) protein (135aa)
8922..9326 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD71353.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD46_126_12

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9500..10921
DNA (1422bp) protein (474aa)
Pentapeptide repeat-like (db=superfamily db_id=SSF141571 from=217 to=365 evalue=1.3e-07)
Pentapeptide (db=HMMPfam db_id=PF00805 from=216 to=243 evalue=1.4e-06 interpro_id=IPR001646 interpro_description=Pentapeptide repeat)
Uncharacterized protein {ECO:0000313|EMBL:EKD71354.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD46_126_13

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11001..12356
DNA (1356bp) protein (452aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=288 to=310)
Uncharacterized protein {ECO:0000313|EMBL:EKD71355.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD46_126_14

Not on your lists

12458..12679
DNA (222bp) protein (74aa)
12458..12679 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD71356.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD46_126_15

Not on your lists

13063..15339
DNA (2277bp) protein (759aa)
DNA internalization-like competence protein ComEC/Rec2
DNA internalization-like competence protein ComEC/Rec2
DNA internalization-related competence protein ComEC/Rec2 n=2 Tax=Nitrosococcus oceani RepID=Q3J7S1_NITOC (db=UNIREF evalue=5.0e-146 bit_score=522.0 identity=40.1 coverage=99.4729907773386)
transmembrane_regions (db=TMHMM db_id=tmhmm from=272 to=294)
ACD46_126_16

Not on your lists

comp(15383..15778)
DNA (396bp) protein (132aa)
response regulator receiver protein
CheY-like (db=superfamily db_id=SSF52172 from=1 to=121 evalue=2.7e-26 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=3 to=121 evalue=8.4e-22)
Response_reg (db=HMMPfam db_id=PF00072 from=4 to=116 evalue=1.1e-19 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD46_126_17

Not on your lists

comp(15788..16831)
DNA (1044bp) protein (348aa)
PAS/PAC sensor hybrid histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
TWO COMPONENT HISTIDINE KINASE (SPORULATION KINASE) (db=HMMPanther db_id=PTHR23283:SF24 from=8 to=343 evalue=8.8e-66)
ACD46_126_18

Not on your lists

17089..19431
DNA (2343bp) protein (781aa)
chromosome segregation protein SMC
chromosome segregation protein SMC
Chromosome segregation SMC protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTL2_THISH (db=UNIREF evalue=2.0e-175 bit_score=620.0 identity=45.64 coverage=99.359795134443)
coiled-coil (db=Coil db_id=coil from=321 to=384 evalue=NA)
Displaying 18 items

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