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ACD4_18

Alias: ACD4_23690.19691.13

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_18_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(336..749)
DNA (414bp) protein (138aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
seg (db=Seg db_id=seg from=114 to=128)
ACD4_18_2
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(760..1698)
DNA (939bp) protein (313aa)
seg (db=Seg db_id=seg from=269 to=279)
seg (db=Seg db_id=seg from=189 to=202)
seg (db=Seg db_id=seg from=2 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=273 to=295)
ACD4_18_3
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(1701..2753)
DNA (1053bp) protein (351aa)
Twitching motility protein
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=111 to=350 evalue=3.9e-47)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=7 to=346 evalue=3.9e-43)
GSPII_E (db=HMMPfam db_id=PF00437 from=13 to=258 evalue=3.7e-29 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
ACD4_18_4
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(2763..3311)
DNA (549bp) protein (183aa)
coiled-coil (db=Coil db_id=coil from=131 to=169 evalue=NA)
seg (db=Seg db_id=seg from=57 to=80)
seg (db=Seg db_id=seg from=87 to=108)
coiled-coil 131..169 Tax=ACD4
ACD4_18_5
ACD4, Gracilibacteria, Bacteria

Not on your lists

3470..3769
DNA (300bp) protein (100aa)
coiled-coil (db=Coil db_id=coil from=9 to=30 evalue=NA)
DUF149 (db=HMMPfam db_id=PF02575 from=7 to=90 evalue=6.9e-13 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
YbaB-like (db=superfamily db_id=SSF82607 from=6 to=99 evalue=1.4e-11 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
no description (db=Gene3D db_id=G3DSA:3.30.1310.10 from=3 to=98 evalue=1.1e-06 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
ACD4_18_6
ACD4, Gracilibacteria, Bacteria

Not on your lists

5558..6169
DNA (612bp) protein (204aa)
seg (db=Seg db_id=seg from=186 to=199)
seg (db=Seg db_id=seg from=152 to=172)
seg (db=Seg db_id=seg from=82 to=99)
seg (db=Seg db_id=seg from=48 to=81)
ACD4_18_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(6171..6698)
DNA (528bp) protein (176aa)
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
seg (db=Seg db_id=seg from=145 to=160)
GidB (db=HMMPfam db_id=PF02527 from=2 to=158 evalue=2.1e-28 interpro_id=IPR003682 interpro_description=rRNA small subunit methyltransferase G GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA methyltransferase activity (GO:0008649))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=2 to=174 evalue=2.8e-28)
ACD4_18_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(6834..7259)
DNA (426bp) protein (142aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=68)
seg (db=Seg db_id=seg from=13 to=25)
NfeD (db=HMMPfam db_id=PF01957 from=7 to=87 evalue=1.5e-05 interpro_id=IPR002810 interpro_description=Nodulation efficiency, NfeD)
ACD4_18_9
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(7285..8157)
DNA (873bp) protein (291aa)
putative membrane protease subunit HflC
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=19)
seg (db=Seg db_id=seg from=219 to=245)
seg (db=Seg db_id=seg from=61 to=72)
ACD4_18_10
ACD4, Gracilibacteria, Bacteria

Not on your lists

8240..8650
DNA (411bp) protein (137aa)
coiled-coil (db=Coil db_id=coil from=41 to=62 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
coiled-coil 41..62 Tax=ACD4
ACD4_18_11
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(8662..8841)
DNA (180bp) protein (60aa)
seg (db=Seg db_id=seg from=2 to=30)
seg 2..30 Tax=ACD4
ACD4_18_12
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(8934..9320)
DNA (387bp) protein (129aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=125)
transmembrane_regions 7..24 Tax=ACD4
ACD4_18_13
ACD4, Gracilibacteria, Bacteria

Not on your lists


comp(9419..9634)
DNA (216bp) protein (72aa)
rpsR; 30S ribosomal protein S18
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=1 to=68 evalue=2.9e-21 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S18 (db=HMMPfam db_id=PF01084 from=13 to=63 evalue=1.9e-20 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479:SF16 from=3 to=70 evalue=2.2e-20)
ACD4_18_14

Not on your lists

comp(9717..10115)
DNA (399bp) protein (133aa)
single-strand binding protein
seg (db=Seg db_id=seg from=111 to=128)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=132 evalue=9.9e-25 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=107 evalue=4.6e-23 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
ACD4_18_15

Not on your lists


comp(10156..10443)
DNA (288bp) protein (96aa)
SSU ribosomal protein S6P; K02990 small subunit ribosomal protein S6 (db=KEGG evalue=8.0e-11 bit_score=69.3 identity=34.78 coverage=94.7916666666667)
Ribosomal_S6 (db=HMMPfam db_id=PF01250 from=2 to=92 evalue=2.1e-20 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein S6 (db=superfamily db_id=SSF54995 from=1 to=95 evalue=1.9e-18 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
no description (db=Gene3D db_id=G3DSA:3.30.70.60 from=1 to=95 evalue=3.3e-17 interpro_id=IPR014717 interpro_description=Translation elongation factor EF1B/ribosomal protein S6)
ACD4_18_16
ACD4, Gracilibacteria, Bacteria

Not on your lists

10617..11888
DNA (1272bp) protein (424aa)
type II secretion system protein E (GspE)
seg (db=Seg db_id=seg from=291 to=307)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=142 to=420 evalue=6.0e-63)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=10 to=421 evalue=8.0e-58)
ACD4_18_17
ACD4, Gracilibacteria, Bacteria

Not on your lists

12039..12332
DNA (294bp) protein (98aa)
seg (db=Seg db_id=seg from=54 to=73)
seg 54..73 Tax=ACD4
ACD4_18_18
ACD4, Gracilibacteria, Bacteria

Not on your lists

12358..12729
DNA (372bp) protein (124aa)
seg (db=Seg db_id=seg from=57 to=77)
seg 57..77 Tax=ACD4
ACD4_18_19

Not on your lists


comp(12794..12970)
DNA (177bp) protein (59aa)
Ribosomal_L33 (db=HMMPfam db_id=PF00471 from=12 to=52 evalue=4.0e-09 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=2 to=57 evalue=2.0e-07 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=57 evalue=3.4e-05 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Uncharacterized protein {ECO:0000313|EMBL:EKE27021.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD4_18_20

Not on your lists

13155..14498
DNA (1344bp) protein (448aa)
GTP-binding protein Obg/CgtA
seg (db=Seg db_id=seg from=331 to=342)
seg (db=Seg db_id=seg from=239 to=248)
seg (db=Seg db_id=seg from=29 to=41)
ACD4_18_21
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(14490..15020)
DNA (531bp) protein (177aa)
14490..15020 - (rbs_motif=TAAT rbs_spacer=5bp)
hypothetical protein Tax=ACD4
ACD4_18_22
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(15143..15415)
DNA (273bp) protein (91aa)
histone family protein DNA-binding protein
Bac_DNA_binding (db=HMMPfam db_id=PF00216 from=1 to=89 evalue=1.3e-30 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=1 to=90 evalue=4.6e-27 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
IHF-like DNA-binding proteins (db=superfamily db_id=SSF47729 from=1 to=90 evalue=5.3e-27 interpro_id=IPR010992 interpro_description=IHF-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD4_18_23

Not on your lists


15821..16171
DNA (351bp) protein (117aa)
50S ribosomal protein L19 n=1 Tax=Turicibacter sp. PC909 RepID=D4W338_9FIRM (db=UNIREF evalue=4.0e-25 bit_score=116.0 identity=47.37 coverage=96.5811965811966)
rplS; ribosomal protein L19
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=5 to=114 evalue=5.7e-31 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplS_bact: ribosomal protein L19 (db=HMMTigr db_id=TIGR01024 from=3 to=116 evalue=1.3e-26 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD4_18_24
ACD4, Gracilibacteria, Bacteria

Not on your lists

16494..17909
DNA (1416bp) protein (472aa)
dnaA; chromosome replication initiator DnaA
seg (db=Seg db_id=seg from=224 to=232)
seg (db=Seg db_id=seg from=111 to=124)
DnaA: chromosomal replication initiator prot (db=HMMTigr db_id=TIGR00362 from=10 to=469 evalue=8.7e-122 interpro_id=IPR001957 interpro_description=Chromosomal replication control, initiator DnaA GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275))
ACD4_18_25
ACD4, Gracilibacteria, Bacteria

Not on your lists

17881..18033
DNA (153bp) protein (51aa)
seg (db=Seg db_id=seg from=21 to=28)
seg 21..28 Tax=ACD4
ACD4_18_26
ACD4, Gracilibacteria, Bacteria

Not on your lists

17979..18422
DNA (444bp) protein (148aa)
17979..18422 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD4
ACD4_18_27
ACD4, Gracilibacteria, Bacteria

Not on your lists

18410..19063
DNA (654bp) protein (218aa)
rRNA small subunit methyltransferase I
seg (db=Seg db_id=seg from=109 to=122)
Tetrapyrrole methylase (db=superfamily db_id=SSF53790 from=1 to=217 evalue=4.1e-65 interpro_id=IPR000878 interpro_description=Tetrapyrrole methylase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
S-ADENOSYLMETHIONINE-DEPENDENT METHYTRANSFERASE (db=HMMPanther db_id=PTHR21091:SF18 from=42 to=216 evalue=2.0e-45)
ACD4_18_28
ACD4, Gracilibacteria, Bacteria

Not on your lists

19164..19727
DNA (564bp) protein (188aa)
coiled-coil (db=Coil db_id=coil from=119 to=140 evalue=NA)
seg (db=Seg db_id=seg from=87 to=97)
seg (db=Seg db_id=seg from=131 to=145)
coiled-coil 119..140 Tax=ACD4
Displaying 28 items

View Taxonomy