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ACD4_45

Alias: ACD4_68276.18610.13

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_45_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(3..203)
DNA (201bp) protein (67aa)
seg (db=Seg db_id=seg from=46 to=57)
seg 46..57 Tax=ACD4
ACD4_45_2
ACD4, Gracilibacteria, Bacteria

Not on your lists

1392..1832
DNA (441bp) protein (147aa)
hypothetical protein
Bet v1-like (db=superfamily db_id=SSF55961 from=1 to=146 evalue=3.8e-15)
AHSA1 (db=HMMPfam db_id=PF08327 from=12 to=144 evalue=7.6e-10 interpro_id=IPR013538 interpro_description=Activator of Hsp90 ATPase homologue 1-like GO=Biological Process: response to stress (GO:0006950))
Tax=ACD4
ACD4_45_3
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(2065..3246)
DNA (1182bp) protein (394aa)
hypothetical protein (db=KEGG evalue=3.0e-49 bit_score=199.0 identity=35.62 coverage=98.4771573604061)
seg (db=Seg db_id=seg from=362 to=375)
seg (db=Seg db_id=seg from=323 to=345)
seg (db=Seg db_id=seg from=99 to=112)
ACD4_45_4
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(3261..3968)
DNA (708bp) protein (236aa)
macrolide ABC transporter ATP-binding proten
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=6 to=221 evalue=3.8e-82)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=6 to=221 evalue=3.8e-82)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=224 evalue=1.2e-49)
ACD4_45_5
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(3983..5977)
DNA (1995bp) protein (665aa)
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1B4_DESRM (db=UNIREF evalue=4.0e-14 bit_score=84.0 identity=28.65 coverage=26.015037593985)
coiled-coil (db=Coil db_id=coil from=475 to=496 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=38)
ACD4_45_6
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(6020..6511)
DNA (492bp) protein (164aa)
seg (db=Seg db_id=seg from=4 to=17)
seg (db=Seg db_id=seg from=21 to=34)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=6.0)
seg 21..34 Tax=ACD4
ACD4_45_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

6956..7705
DNA (750bp) protein (250aa)
seg (db=Seg db_id=seg from=196 to=216)
seg (db=Seg db_id=seg from=160 to=176)
seg (db=Seg db_id=seg from=139 to=144)
seg (db=Seg db_id=seg from=113 to=128)
ACD4_45_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

7808..8335
DNA (528bp) protein (176aa)
TetR_N (db=HMMPfam db_id=PF00440 from=9 to=49 evalue=4.7e-10 interpro_id=IPR001647 interpro_description=Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Homeodomain-like (db=superfamily db_id=SSF46689 from=4 to=68 evalue=8.2e-10 interpro_id=IPR009057 interpro_description=Homeodomain-like)
no description (db=Gene3D db_id=G3DSA:1.10.10.60 from=2 to=47 evalue=9.1e-07 interpro_id=IPR012287 interpro_description=Homeodomain-related GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription (GO:0045449))
HTH_TETR_2 (db=ProfileScan db_id=PS50977 from=1 to=58 evalue=16.535 interpro_id=IPR001647 interpro_description=Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD4_45_9
ACD4, Gracilibacteria, Bacteria

Not on your lists

8460..8750
DNA (291bp) protein (97aa)
coiled-coil (db=Coil db_id=coil from=6 to=27 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
coiled-coil 6..27 Tax=ACD4
ACD4_45_10
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(8754..9080)
DNA (327bp) protein (109aa)
8754..9080 - (rbs_motif=TTAAT rbs_spacer=8bp)
hypothetical protein Tax=ACD4
hypothetical protein
ACD4_45_11
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(9105..11102)
DNA (1998bp) protein (666aa)
seg (db=Seg db_id=seg from=4 to=15)
seg (db=Seg db_id=seg from=190 to=204)
seg (db=Seg db_id=seg from=621 to=632)
coiled-coil (db=Coil db_id=coil from=179 to=207 evalue=NA)
ACD4_45_12
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(11121..11648)
DNA (528bp) protein (176aa)
seg (db=Seg db_id=seg from=63 to=81)
Homeodomain-like (db=superfamily db_id=SSF46689 from=1 to=69 evalue=5.5e-14 interpro_id=IPR009057 interpro_description=Homeodomain-like)
TetR_N (db=HMMPfam db_id=PF00440 from=5 to=51 evalue=8.4e-14 interpro_id=IPR001647 interpro_description=Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.60 from=1 to=51 evalue=1.1e-08 interpro_id=IPR012287 interpro_description=Homeodomain-related GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription (GO:0045449))
ACD4_45_13
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(11658..14996)
DNA (3339bp) protein (1113aa)
acriflavin resistance protein
acriflavin resistance protein
Acriflavin resistance protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXQ1_9PROT (db=UNIREF evalue=9.0e-111 bit_score=405.0 identity=28.12 coverage=94.8787061994609)
transmembrane_regions (db=TMHMM db_id=tmhmm from=1062 to=1084)
ACD4_45_14
ACD4, Gracilibacteria, Bacteria

Not on your lists

15701..16246
DNA (546bp) protein (182aa)
15701..16246 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD4
ACD4_45_15
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(16823..17494)
DNA (672bp) protein (224aa)
YocJ
seg (db=Seg db_id=seg from=15 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
no description (db=Gene3D db_id=G3DSA:3.40.50.360 from=22 to=223 evalue=1.7e-32)
1.6.5.2 Jill Banfield (11/15/12)
ACD4_45_16
ACD4, Gracilibacteria, Bacteria

Not on your lists

17518..17823
DNA (306bp) protein (102aa)
cinnamoyl ester hydrolase
HxlR (db=HMMPfam db_id=PF01638 from=13 to=99 evalue=7.6e-17 interpro_id=IPR002577 interpro_description=Helix-turn-helix, HxlR type)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=98 evalue=4.2e-16)
HTH_HXLR (db=ProfileScan db_id=PS51118 from=4 to=101 evalue=21.292 interpro_id=IPR002577 interpro_description=Helix-turn-helix, HxlR type)
ACD4_45_17
ACD4, Gracilibacteria, Bacteria

Not on your lists

18007..18648
DNA (642bp) protein (214aa)
18007..18648 + (rbs_motif=TTAA rbs_spacer=8bp)
hypothetical protein Tax=ACD4
Displaying 17 items

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