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ACD4_63

Alias: ACD4_45448.8435.13

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_63_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

1..744
DNA (744bp) protein (248aa)
rlmN2; ribosomal RNA large subunit methyltransferase N 2 (EC:2.1.1.- 2.1.1.192)
Ribosomal RNA large subunit methyltransferase N n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RLMN_MOOTA (db=UNIREF evalue=2.0e-53 bit_score=212.0 identity=44.67 coverage=96.7741935483871)
Radical_SAM (db=HMMPfam db_id=PF04055 from=7 to=130 evalue=3.5e-08 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=1 to=229 evalue=4.9e-06)
ACD4_63_2
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(793..1620)
DNA (828bp) protein (276aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
coiled-coil (db=Coil db_id=coil from=193 to=214 evalue=NA)
coiled-coil (db=Coil db_id=coil from=150 to=171 evalue=NA)
ACD4_63_3
ACD4, Gracilibacteria, Bacteria

Not on your lists

1890..2441
DNA (552bp) protein (184aa)
TPR-like (db=superfamily db_id=SSF48452 from=20 to=159 evalue=2.1e-14)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=35 to=151 evalue=1.6e-12 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR DOMAIN PROTEIN (db=HMMPanther db_id=PTHR23083:SF24 from=27 to=167 evalue=2.1e-07)
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=27 to=167 evalue=2.1e-07)
ACD4_63_4
ACD4, Gracilibacteria, Bacteria

Not on your lists

2539..2721
DNA (183bp) protein (61aa)
2539..2721 + (rbs_motif=TTAAT rbs_spacer=7bp)
hypothetical protein Tax=ACD4
ACD4_63_5
ACD4, Gracilibacteria, Bacteria

Not on your lists

4728..5954
DNA (1227bp) protein (409aa)
cyclopropane-fatty-acyl-phospholipid synthase
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=116 to=391 evalue=8.5e-40)
CMAS (db=HMMPfam db_id=PF02353 from=123 to=389 evalue=7.3e-39 interpro_id=IPR003333 interpro_description=Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase GO=Biological Process: lipid biosynthetic process (GO:0008610))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=134 to=395 evalue=4.5e-29)
ACD4_63_6
ACD4, Gracilibacteria, Bacteria

Not on your lists

5967..6194
DNA (228bp) protein (76aa)
5967..6194 + (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=ACD4
ACD4_63_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(6195..6404)
DNA (210bp) protein (70aa)
tRNA/rRNA methyltransferase (SpoU) (db=KEGG evalue=3.0e-09 bit_score=64.3 identity=40.58 coverage=97.1428571428571)
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=3 to=68 evalue=4.7e-13)
RRNA METHYLASE (db=HMMPanther db_id=PTHR12029:SF7 from=3 to=68 evalue=4.7e-13)
SpoU_methylase (db=HMMPfam db_id=PF00588 from=12 to=66 evalue=6.1e-12 interpro_id=IPR001537 interpro_description=tRNA/rRNA methyltransferase, SpoU GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
ACD4_63_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(7068..7745)
DNA (678bp) protein (226aa)
heat shock protein DnaJ domain-containing protein
seg (db=Seg db_id=seg from=69 to=86)
DNAJ_1 (db=PatternScan db_id=PS00636 from=47 to=66 evalue=0.0 interpro_id=IPR018253 interpro_description=Heat shock protein DnaJ, conserved site GO=Molecular Function: heat shock protein binding (GO:0031072))
DNAJ/HSP40 (db=HMMPanther db_id=PTHR11821 from=1 to=209 evalue=1.8e-38 interpro_id=IPR015609 interpro_description=Molecular chaperone, heat shock protein, Hsp40, DnaJ)
ACD4_63_9
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(7767..8348)
DNA (582bp) protein (194aa)
Metal dependent phosphohydrolase
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=2 to=175 evalue=5.8e-29)
no description (db=Gene3D db_id=G3DSA:1.10.3210.10 from=4 to=183 evalue=1.3e-27)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR11845 from=6 to=192 evalue=4.2e-19)
ACD4_63_10
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(8349..8471)
DNA (123bp) protein (41aa)
8349..8471 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD4
Displaying 10 items

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