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ACD4_64

Alias: ACD4_103279.7272.11

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_64_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(3..263)
DNA (261bp) protein (87aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=62 to=76)
seg (db=Seg db_id=seg from=5 to=22)
ACD4_64_2
ACD4, Gracilibacteria, Bacteria

Not on your lists

391..792
DNA (402bp) protein (134aa)
391..792 + (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD4
ACD4_64_3
unknown

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comp(1052..2776)
DNA (1725bp) protein (575aa)
Lipid A export ATP-binding/permease protein MsbA
MDR-like ABC transporter n=3 Tax=Oryza sativa RepID=Q8GU71_ORYSJ (db=UNIREF evalue=2.0e-47 bit_score=194.0 identity=42.8 coverage=41.3913043478261)
seg (db=Seg db_id=seg from=392 to=405)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=267)
ACD4_64_4
unknown

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3276..3899
DNA (624bp) protein (208aa)
Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFA4_9EURY (db=UNIREF evalue=9.0e-38 bit_score=159.0 identity=42.21 coverage=92.3076923076923)
hypothetical protein; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] (db=KEGG evalue=9.0e-13 bit_score=76.6 identity=27.98 coverage=84.6153846153846)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=196 evalue=5.1e-12 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
Exonuclease RNase T and DNA polymerase III n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFA4_9EURY Tax=ACD4
ACD4_64_5
unknown

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4158..4709
DNA (552bp) protein (184aa)
NUDIX hydrolase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KRY1_9BACT (db=UNIREF evalue=1.0e-29 bit_score=132.0 identity=40.0 coverage=89.1304347826087)
hypothetical protein; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] (db=KEGG evalue=1.0e-09 bit_score=65.5 identity=26.22 coverage=86.4130434782609)
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=6 to=176 evalue=3.4e-14 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=16 to=174 evalue=1.7e-13 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD4_64_6
ACD4, Gracilibacteria, Bacteria

Not on your lists

4897..5148
DNA (252bp) protein (84aa)
seg (db=Seg db_id=seg from=63 to=72)
coiled-coil (db=Coil db_id=coil from=37 to=58 evalue=NA)
Seryl_tRNA_N (db=HMMPfam db_id=PF02403 from=1 to=57 evalue=3.5e-12 interpro_id=IPR015866 interpro_description=Seryl-tRNA synthetase, class IIa, N-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: serine-tRNA ligase activity (GO:0004828), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: seryl-tRNA aminoacylation (GO:0006434))
tRNA-binding arm (db=superfamily db_id=SSF46589 from=1 to=55 evalue=2.9e-11 interpro_id=IPR010978 interpro_description=tRNA-binding arm GO=Molecular Function: nucleotide binding (GO:0000166))
ACD4_64_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

5202..5894
DNA (693bp) protein (231aa)
seryl-tRNA synthetase (EC:6.1.1.11)
seg (db=Seg db_id=seg from=117 to=128)
SERYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11778 from=3 to=226 evalue=3.5e-58 interpro_id=IPR018156 interpro_description=Seryl-tRNA synthetase, class IIa, C-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=9 to=225 evalue=1.5e-43)
ACD4_64_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

5933..6310
DNA (378bp) protein (126aa)
hypothetical protein
SERYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11778 from=1 to=123 evalue=9.9e-47 interpro_id=IPR018156 interpro_description=Seryl-tRNA synthetase, class IIa, C-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=1 to=117 evalue=2.6e-38)
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=1 to=122 evalue=2.5e-32)
ACD4_64_9

Not on your lists

comp(6490..7068)
DNA (579bp) protein (193aa)
hypothetical protein
seg (db=Seg db_id=seg from=9 to=22)
C-type lectin-like (db=superfamily db_id=SSF56436 from=1 to=172 evalue=4.1e-27 interpro_id=IPR016187 interpro_description=C-type lectin fold GO=Molecular Function: binding (GO:0005488))
C-type lectin-like protein {ECO:0000313|EMBL:EKE27197.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Displaying 9 items

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