ggKbase home page

ACD4_93

Alias: ACD4_50110.13425.12

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_93_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(49..525)
DNA (477bp) protein (159aa)
seg (db=Seg db_id=seg from=91 to=102)
seg (db=Seg db_id=seg from=2 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
ACD4_93_2

Not on your lists

735..1373
DNA (639bp) protein (213aa)
lexA-1; LexA repressor (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] (db=KEGG evalue=3.0e-15 bit_score=85.1 identity=31.6 coverage=91.0798122065728)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=69 evalue=3.8e-11)
LexA_DNA_bind (db=HMMPfam db_id=PF01726 from=2 to=57 evalue=2.0e-08 interpro_id=IPR006199 interpro_description=LexA, DNA-binding domain GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=67 evalue=2.0e-08 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD4_93_3
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(1438..1959)
DNA (522bp) protein (174aa)
1438..1959 - (rbs_motif=TTAAT rbs_spacer=9bp)
hypothetical protein Tax=ACD4
ACD4_93_4
ACD4, Gracilibacteria, Bacteria

Not on your lists

2832..3242
DNA (411bp) protein (137aa)
2832..3242 + (rbs_motif=TTAAT rbs_spacer=6bp)
hypothetical protein Tax=ACD4
ACD4_93_5
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(3243..4484)
DNA (1242bp) protein (414aa)
Putative uncharacterized protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LRZ7_DESBD (db=UNIREF evalue=2.0e-87 bit_score=327.0 identity=39.47 coverage=88.4057971014493)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=183 to=222)
ACD4_93_6

Not on your lists

4583..5050
DNA (468bp) protein (156aa)
hypothetical protein
no description (db=HMMSmart db_id=SM00562 from=2 to=155 evalue=6.4e-37 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
Nucleoside diphosphate kinase, NDK (db=superfamily db_id=SSF54919 from=1 to=155 evalue=6.1e-36 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
NDK (db=HMMPfam db_id=PF00334 from=3 to=152 evalue=2.3e-35 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
ACD4_93_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

5132..5842
DNA (711bp) protein (237aa)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=135 to=229 evalue=2.6e-06)
P-loop containing nucleoside triphosphate hydrolases Tax=ACD4
ACD4_93_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

5844..6305
DNA (462bp) protein (154aa)
hydrolase
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=6 to=151 evalue=5.2e-22 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=1 to=131 evalue=5.5e-21 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=7 to=128 evalue=1.8e-15 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD4_93_9

Not on your lists

6323..6772
DNA (450bp) protein (150aa)
hypothetical protein; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] (db=KEGG evalue=4.0e-14 bit_score=80.1 identity=34.09 coverage=79.3333333333333)
seg (db=Seg db_id=seg from=50 to=62)
Nudix (db=superfamily db_id=SSF55811 from=7 to=149 evalue=1.8e-18 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=16 to=136 evalue=1.1e-11 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD4_93_10
ACD4, Gracilibacteria, Bacteria

Not on your lists

6777..7238
DNA (462bp) protein (154aa)
NUDIX hydrolase
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=6 to=151 evalue=5.3e-22 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=1 to=130 evalue=2.2e-21 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=6 to=128 evalue=1.2e-15 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD4_93_11
ACD4, Gracilibacteria, Bacteria

Not on your lists

7305..7742
DNA (438bp) protein (146aa)
7305..7742 + (rbs_motif=TTAAT rbs_spacer=8bp)
hypothetical protein Tax=ACD4
ACD4_93_12

Not on your lists

7750..8682
DNA (933bp) protein (311aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=9 to=307 evalue=2.4e-59 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=5 to=282 evalue=7.1e-56)
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=77 to=310 evalue=7.8e-50 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
ACD4_93_13
ACD4, Gracilibacteria, Bacteria

Not on your lists

8709..9854
DNA (1146bp) protein (382aa)
hydrolase of HD superfamily-like protein; K07023 putative hydrolases of HD superfamily (db=KEGG evalue=6.0e-13 bit_score=79.0 identity=26.47 coverage=83.5078534031414)
seg (db=Seg db_id=seg from=82 to=93)
seg (db=Seg db_id=seg from=295 to=304)
seg (db=Seg db_id=seg from=236 to=248)
ACD4_93_14

Not on your lists

comp(9897..10358)
DNA (462bp) protein (154aa)
metalloprotein, YbeY/UPF0054family
seg (db=Seg db_id=seg from=5 to=19)
UPF0054 (db=PatternScan db_id=PS01306 from=114 to=124 evalue=0.0 interpro_id=IPR020549 interpro_description=Uncharacterised protein family UPF0054, conserved site)
UPF0054 (db=HMMPfam db_id=PF02130 from=12 to=140 evalue=5.1e-29 interpro_id=IPR002036 interpro_description=Uncharacterised protein family UPF0054 GO=Molecular Function: metallopeptidase activity (GO:0008237), Molecular Function: zinc ion binding (GO:0008270))
ACD4_93_15
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(10345..12567)
DNA (2223bp) protein (741aa)
hypothetical protein (db=KEGG evalue=2.0e-07 bit_score=62.0 identity=21.28 coverage=37.1120107962213)
transmembrane_regions (db=TMHMM db_id=tmhmm from=159 to=180)
seg (db=Seg db_id=seg from=80 to=99)
seg (db=Seg db_id=seg from=212 to=223)
ACD4_93_16
ACD4, Gracilibacteria, Bacteria

Not on your lists

12736..12912
DNA (177bp) protein (59aa)
12736..12912 + (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD4
ACD4_93_17
ACD4, Gracilibacteria, Bacteria

Not on your lists

12976..13461
DNA (486bp) protein (162aa)
coiled-coil (db=Coil db_id=coil from=21 to=42 evalue=NA)
coiled-coil 21..42 Tax=ACD4
Displaying 17 items

View Taxonomy