name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD4_125_1
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
158..301
|
seg (db=Seg db_id=seg from=2 to=17)
seg (db=Seg db_id=seg from=34 to=42)
seg 2..17 Tax=ACD4
|
|
ACD4_125_2
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
328..528
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
seg (db=Seg db_id=seg from=13 to=29)
|
|
ACD4_125_3
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
637..2283
|
Ig domain-containing protein
seg (db=Seg db_id=seg from=473 to=497)
seg (db=Seg db_id=seg from=356 to=374)
seg (db=Seg db_id=seg from=266 to=284)
|
|
ACD4_125_4
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
2513..3223
|
Zinc transporter ZupT
seg (db=Seg db_id=seg from=216 to=227)
seg (db=Seg db_id=seg from=2 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
|
|
ACD4_125_5
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
3274..3714
|
seg (db=Seg db_id=seg from=120 to=140)
seg 120..140 Tax=ACD4
|
|
ACD4_125_6
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
3730..4368
|
seg (db=Seg db_id=seg from=188 to=200)
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=202)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=109)
|
|
ACD4_125_7
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
4372..5700
|
DNA repair protein RadA
DNA repair protein RadA
seg (db=Seg db_id=seg from=360 to=378)
DNAREPAIRADA (db=FPrintScan db_id=PR01874 from=70 to=98 evalue=3.0e-56 interpro_id=IPR004504 interpro_description=DNA repair protein RadA GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
|
|
ACD4_125_8
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
comp(5697..6161)
|
5697..6161 - (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=ACD4
|
|
ACD4_125_9
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
comp(6221..7687)
|
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF (EC:6.3.2.10)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
seg (db=Seg db_id=seg from=45 to=67)
|
|
ACD4_125_10
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
comp(7677..8435)
|
MhpC4; alpha/beta hydrolase
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=7 to=248 evalue=4.2e-32)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=8 to=248 evalue=1.6e-25)
VALACYCLOVIR HYDROLASE (db=HMMPanther db_id=PTHR10992:SF17 from=27 to=248 evalue=8.5e-19)
|
|
ACD4_125_11
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
comp(8437..8784)
|
ddlA2; D-alanine-D-alanine ligase and related ATP-grasp enzyme; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] (db=KEGG evalue=7.0e-11 bit_score=69.3 identity=36.26 coverage=76.7241379310345)
Dala_Dala_lig_C (db=HMMPfam db_id=PF07478 from=5 to=89 evalue=1.1e-11 interpro_id=IPR011095 interpro_description=D-alanine--D-alanine ligase, C-terminal GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=10 to=90 evalue=4.6e-07)
no description (db=Gene3D db_id=G3DSA:3.30.470.20 from=10 to=114 evalue=2.8e-06 interpro_id=IPR013816 interpro_description=ATP-grasp fold, subdomain 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
|
|
ACD4_125_12
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
comp(9670..11118)
|
excinuclease ABC subunit C
seg (db=Seg db_id=seg from=83 to=92)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
UvrC_HhH_N (db=HMMPfam db_id=PF08459 from=272 to=416 evalue=2.8e-37 interpro_id=IPR001162 interpro_description=Excinuclease ABC, C subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
|
|
ACD4_125_13
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
comp(11181..11660)
|
uvrC; excinuclease ABC subunit C
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=14 to=99 evalue=1.2e-21 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
no description (db=HMMSmart db_id=SM00465 from=15 to=97 evalue=3.1e-14 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=16 to=92 evalue=2.6e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
|
|
ACD4_125_14
ACD4, Gracilibacteria, Bacteria
|
Not on your lists |
11723..12226
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=123 to=141)
transmembrane_regions 7..29 Tax=ACD4
|