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ACD4_186

Alias: ACD4p_66877.12075.10

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_186_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(37..492)
DNA (456bp) protein (152aa)
seg (db=Seg db_id=seg from=3 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=75)
seg 3..19 Tax=ACD4
ACD4_186_2
ACD4, Gracilibacteria, Bacteria

Not on your lists

722..889
DNA (168bp) protein (56aa)
722..889 + ( gc_cont=0.143)
hypothetical protein Tax=ACD4
ACD4_186_3
unknown

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1082..2716
DNA (1635bp) protein (545aa)
NUDIX hydrolase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSE8_9BACT (db=UNIREF evalue=3.0e-41 bit_score=174.0 identity=28.85 coverage=89.9082568807339)
seg (db=Seg db_id=seg from=100 to=114)
coiled-coil (db=Coil db_id=coil from=420 to=448 evalue=NA)
seg (db=Seg db_id=seg from=74 to=90)
ACD4_186_4
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(2734..3129)
DNA (396bp) protein (132aa)
2734..3129 - ( gc_cont=0.290)
hypothetical protein Tax=ACD4
ACD4_186_5
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(3145..3426)
DNA (282bp) protein (94aa)
seg (db=Seg db_id=seg from=76 to=83)
seg (db=Seg db_id=seg from=60 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=61)
ACD4_186_6
ACD4, Gracilibacteria, Bacteria

Not on your lists


comp(3439..3876)
DNA (438bp) protein (146aa)
50S ribosomal protein L11 n=2 Tax=Collinsella RepID=B6GB39_9ACTN (db=UNIREF evalue=2.0e-42 bit_score=174.0 identity=62.04 coverage=93.1506849315068)
50S ribosomal protein L11
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=5 to=145 evalue=1.3e-65 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=11 to=142 evalue=1.8e-62 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD4_186_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

4111..4581
DNA (471bp) protein (157aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=138)
seg (db=Seg db_id=seg from=69 to=81)
ACD4_186_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

4598..5626
DNA (1029bp) protein (343aa)
Holliday junction DNA helicase RuvB
ruvB: Holliday junction DNA helicase RuvB (db=HMMTigr db_id=TIGR00635 from=34 to=338 evalue=3.2e-118 interpro_id=IPR004605 interpro_description=DNA helicase, Holliday junction RuvB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: four-way junction helicase activity (GO:0009378))
HOLLIDAY JUNCTION DNA HELICASE RUVB (db=HMMPanther db_id=PTHR13779:SF2 from=35 to=340 evalue=3.9e-117 interpro_id=IPR004605 interpro_description=DNA helicase, Holliday junction RuvB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: four-way junction helicase activity (GO:0009378))
HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED (db=HMMPanther db_id=PTHR13779 from=35 to=340 evalue=3.9e-117)
ACD4_186_9
ACD4, Gracilibacteria, Bacteria

Not on your lists

5686..6099
DNA (414bp) protein (138aa)
5686..6099 + ( gc_cont=0.278)
hypothetical protein Tax=ACD4
ACD4_186_10
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(6096..6482)
DNA (387bp) protein (129aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=127)
ACD4_186_11
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(6549..7169)
DNA (621bp) protein (207aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77)
seg (db=Seg db_id=seg from=83 to=94)
seg (db=Seg db_id=seg from=181 to=193)
PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE (db=HMMPanther db_id=PTHR11579 from=4 to=204 evalue=5.6e-41 interpro_id=IPR000682 interpro_description=Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO=Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719), Biological Process: protein modification process (GO:0006464))
ACD4_186_12
ACD4, Gracilibacteria, Bacteria

Not on your lists

7463..7954
DNA (492bp) protein (164aa)
7463..7954 + ( gc_cont=0.272)
hypothetical protein Tax=ACD4
ACD4_186_13
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(9058..12111)
DNA (3054bp) protein (1018aa)
hypothetical protein
seg (db=Seg db_id=seg from=735 to=747)
seg (db=Seg db_id=seg from=177 to=189)
transmembrane_regions (db=TMHMM db_id=tmhmm from=756 to=775)
Displaying 13 items

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