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ACD52_91

Alias: ACD52_120371.6558.8

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_91_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(3..338)
DNA (336bp) protein (112aa)
hypothetical protein
DUF28 (db=HMMPfam db_id=PF01709 from=5 to=112 evalue=3.9e-43 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
YebC-like (db=superfamily db_id=SSF75625 from=3 to=112 evalue=3.0e-40 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR12532 from=1 to=112 evalue=2.9e-33 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
ACD52_91_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(1127..2047)
DNA (921bp) protein (307aa)
seg (db=Seg db_id=seg from=190 to=200)
seg (db=Seg db_id=seg from=23 to=36)
seg (db=Seg db_id=seg from=2 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD52_91_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(2048..2899)
DNA (852bp) protein (284aa)
Transporter, CPA2 family
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
ACD52_91_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(2869..3693)
DNA (825bp) protein (275aa)
Transporter, CPA2 family
seg (db=Seg db_id=seg from=27 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=213 to=235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
ACD52_91_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(3711..4421)
DNA (711bp) protein (237aa)
ribosomal large subunit pseudouridine synthase D
PSI_RLU (db=PatternScan db_id=PS01129 from=58 to=72 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=4 to=233 evalue=1.1e-58 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=1 to=222 evalue=5.6e-56)
ACD52_91_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(4426..4815)
DNA (390bp) protein (130aa)
DnaK suppressor protein
coiled-coil (db=Coil db_id=coil from=22 to=43 evalue=NA)
ZF_DKSA_1 (db=PatternScan db_id=PS01102 from=99 to=123 evalue=0.0 interpro_id=IPR020458 interpro_description=Zinc finger, DksA/TraR C4-type conserved site)
zf-dskA_traR (db=HMMPfam db_id=PF01258 from=94 to=129 evalue=5.8e-10 interpro_id=IPR000962 interpro_description=Zinc finger, DksA/TraR C4-type GO=Molecular Function: zinc ion binding (GO:0008270))
ACD52_91_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(4820..5419)
DNA (600bp) protein (200aa)
seg (db=Seg db_id=seg from=179 to=197)
seg (db=Seg db_id=seg from=34 to=53)
seg (db=Seg db_id=seg from=2 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=196)
ACD52_91_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

5458..5919
DNA (462bp) protein (154aa)
seg (db=Seg db_id=seg from=137 to=151)
seg (db=Seg db_id=seg from=7 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
ACD52_91_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(5912..6496)
DNA (585bp) protein (195aa)
Elongation factor P
EFP (db=PatternScan db_id=PS01275 from=158 to=177 evalue=0.0 interpro_id=IPR013852 interpro_description=Translation elongation factor P/YeiP, conserved site)
efp: translation elongation factor P (db=HMMTigr db_id=TIGR00038 from=2 to=193 evalue=5.9e-82 interpro_id=IPR011768 interpro_description=Translation elongation factor P GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: cytoplasm (GO:0005737), Biological Process: translational elongation (GO:0006414))
Translation elongation factor P (db=HMMPIR db_id=PIRSF005901 from=1 to=194 evalue=1.2e-44 interpro_id=IPR020599 interpro_description=Translation elongation factor P/YeiP)
Displaying 9 items

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