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ACD53_56

Alias: ACD53_5485.15310.29

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD53_56_1
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2..166
DNA (165bp) protein (55aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AM28_GEOSK
Uncharacterized protein {ECO:0000313|EMBL:AAR33453.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurred
ACD53_56_2
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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445..1749
DNA (1305bp) protein (435aa)
Aminotransferase, classes I and II n=1 Tax=Geobacter sulfurreducens RepID=Q74GX7_GEOSL (db=UNIREF evalue=0.0 bit_score=902.0 identity=100.0 coverage=99.5402298850575)
amino acid aminotransferase rbh
amino acid aminotransferase rbh
PTHR11751 (db=HMMPanther db_id=PTHR11751 from=52 to=434 evalue=7.60000011115791e-88)
ACD53_56_3
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1923..2876)
DNA (954bp) protein (318aa)
Transglycosylase n=1 Tax=Geobacter sulfurreducens RepID=Q74GX8_GEOSL (db=UNIREF evalue=0.0 bit_score=650.0 identity=100.0 coverage=99.3710691823899)
biosynthetic peptidoglycan transglycosylase rbh
biosynthetic peptidoglycan transglycosylase rbh
Transgly (db=HMMPfam db_id=PF00912 from=57 to=223 evalue=1.09999999999999e-55 interpro_id=IPR001264 interpro_description=Glycosyl transferase, family 51 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Cellular Component: peptidoglycan-based cell wall (GO:0009274))
ACD53_56_4
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2879..3970)
DNA (1092bp) protein (364aa)
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase rbh
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase rbh
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Geobacter sulfurreducens RepID=Q3V8D3_GEOSL (db=UNIREF evalue=0.0 bit_score=640.0 identity=100.0 coverage=92.3076923076923)
seg (db=Seg db_id=seg from=336 to=353)
ACD53_56_5
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4521..5933)
DNA (1413bp) protein (471aa)
atpD; ATP synthase F1 subunit beta rbh
atpD; ATP synthase F1 subunit beta rbh
ATP synthase subunit beta 1 n=10 Tax=Desulfuromonadales RepID=ATPB1_PELPD (db=UNIREF evalue=0.0 bit_score=813.0 identity=90.61 coverage=97.0276008492569)
atpD (db=HMMTigr db_id=TIGR01039 from=4 to=468 evalue=0.0 interpro_id=IPR005722 interpro_description=ATPase, F1 complex, beta subunit GO=Molecular Function: hydrogen-exporting ATPase activity, phosphorylative mechanism (GO:0008553), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
ACD53_56_6
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5991..6854)
DNA (864bp) protein (288aa)
atpG; ATP synthase F1 subunit gamma rbh
atpG; ATP synthase F1 subunit gamma rbh
ATP synthase gamma chain n=2 Tax=Geobacter RepID=ATPG_GEOMG (db=UNIREF evalue=4.0e-153 bit_score=543.0 identity=91.29 coverage=99.3055555555556)
ATPASE_GAMMA (db=PatternScan db_id=PS00153 from=271 to=284 evalue=0.0 interpro_id=IPR000131 interpro_description=ATPase, F1 complex, gamma subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961
ACD53_56_7
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6876..8387)
DNA (1512bp) protein (504aa)
atpA; ATP synthase F1 subunit alpha rbh
atpA; ATP synthase F1 subunit alpha rbh
ATP synthase subunit alpha n=7 Tax=Geobacter RepID=ATPA_GEOMG (db=UNIREF evalue=0.0 bit_score=934.0 identity=96.94 coverage=97.0238095238095)
ATPase_F1_a (db=HMMPanther db_id=PTHR15184:SF3 from=195 to=501 evalue=0.0 interpro_id=IPR017458 interpro_description=ATPase, F1 complex, alpha subunit, C-terminal GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotational mecha
ACD53_56_8
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8396..8938)
DNA (543bp) protein (181aa)
ATP synthase subunit delta n=1 Tax=Geobacter sulfurreducens RepID=ATPD_GEOSL (db=UNIREF evalue=3.0e-97 bit_score=356.0 identity=100.0 coverage=98.8950276243094)
atpH; ATP synthase F1 subunit delta rbh
atpH; ATP synthase F1 subunit delta rbh
OSCP (db=HMMPfam db_id=PF00213 from=6 to=175 evalue=6.19999999999994e-46 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Cellular Component: plasma membrane (GO:0005886), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
ACD53_56_9
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9604..10029)
DNA (426bp) protein (142aa)
atpX; ATP synthase F0, B' subunit
ATP-synt_B (db=HMMPfam db_id=PF00430 from=8 to=137 evalue=1.8e-17 interpro_id=IPR002146 interpro_description=ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO=Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263))
ATP synthase subunit b n=2 Tax=Geobacter sulfurreducens RepID=Q74GY5_GEOSL
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subuni
ACD53_56_10
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10208..10312)
DNA (105bp) protein (35aa)
seg (db=Seg db_id=seg from=3 to=13)
ParB-like nuclease domain-containing protein
ParB-like nuclease domain protein, putative transcriptional regulator {ECO:0000313|EMBL:AAR33442.2}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobactera
ACD53_56_11
unknown

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10399..10620
DNA (222bp) protein (74aa)
10399..10620 + (rbs_motif=None rbs_spacer=None)
ACD53_56_12
unknown

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10708..11118
DNA (411bp) protein (137aa)
10708..11118 + (rbs_motif=None rbs_spacer=None)
ACD53_56_13
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11090..11863)
DNA (774bp) protein (258aa)
chromosome partitioning ATPase Soj rbh
chromosome partitioning ATPase Soj rbh
Soj protein n=1 Tax=Geobacter sulfurreducens RepID=Q74GY7_GEOSL (db=UNIREF evalue=6.0e-127 bit_score=456.0 identity=100.0 coverage=99.2248062015504)
SSF52540 (db=superfamily db_id=SSF52540 from=2 to=253 evalue=5.9e-70)
ACD53_56_14
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12051..12332
DNA (282bp) protein (94aa)
cytochrome c, 3 heme-binding sites
Multiheme cytochromes (db=superfamily db_id=SSF48695 from=13 to=86 evalue=1.8e-07)
Cytochrom_CIII (db=HMMPfam db_id=PF02085 from=26 to=90 evalue=7.7e-06 interpro_id=IPR020942 interpro_description=Cytochrome c, class III, conserved region GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
MULTIHEME_CYTC (db=ProfileScan db_id=PS51008 from=22 to=90 evalue=8.857 interpro_id=IPR011031 interpro_description=Multihaem cytochrome)
ACD53_56_15
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12393..12782)
DNA (390bp) protein (130aa)
response regulator
Response regulator, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74GY9_GEOSL (db=UNIREF evalue=2.0e-56 bit_score=221.0 identity=100.0 coverage=98.4615384615385)
RESPONSE_REGULATORY (db=ProfileScan db_id=PS50110 from=5 to=126 evalue=0.0 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY_like (db=superfamily db_id=SSF52172 from=1 to=125 evalue=1.3e-31 interpro_id=IPR011006 interpro_description=CheY-like)
ACD53_56_16
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12800..14614)
DNA (1815bp) protein (605aa)
sensor histidine kinase rbh
sensor histidine kinase rbh
Sensor protein n=1 Tax=Geobacter sulfurreducens RepID=Q74GZ0_GEOSL (db=UNIREF evalue=0.0 bit_score=1182.0 identity=100.0 coverage=99.6694214876033)
coiled-coil (db=Coil db_id=coil from=365 to=386 evalue=NA)
ACD53_56_17
unknown

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14694..14990
DNA (297bp) protein (99aa)
14694..14990 + (rbs_motif=None rbs_spacer=None)
ACD53_56_18
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15114..15362)
DNA (249bp) protein (83aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Geobacter sulfurreducens RepID=Q74GZ1_GEOSL (db=UNIREF evalue=1.0e-39 bit_score=165.0 identity=100.0 coverage=97.5903614457831)
selB; selenocysteine-specific translation elongation factor
SelB-wing_3 (db=HMMPfam db_id=PF09107 from=33 to=80 evalue=5.5e-22 interpro_id=IPR015191 interpro_description=Translation elongation factor SelB, winged helix, type 3 GO=Biological Process: selenocysteine incorporation (GO:0001514), Molecular Function: RNA binding (GO:0003723), Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Cellular Component: cytoplasm (GO:0005737))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=23 to=82 evalue=7.0e-17)
Displaying 18 items

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