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ACD53_65

Alias: ACD53_8090.7783.29

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD53_65_1
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..395
DNA (393bp) protein (131aa)
yicC; stationary phase survival protein
TIGR00255: conserved hypothetical protein T (db=HMMTigr db_id=TIGR00255 from=25 to=130 evalue=3.0e-49 interpro_id=IPR005229 interpro_description=Conserved hypothetical protein CHP00255)
DUF1732 (db=HMMPfam db_id=PF08340 from=45 to=130 evalue=3.3e-37 interpro_id=IPR013551 interpro_description=Domain of unknown function DUF1732)
Stationary phase survival protein, YicC family, YicC_N and DUF1732 domain-containing n=2 Tax=Geobacter sulfurreducens RepID=D7ALE3_GEOSK
ACD53_65_2
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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419..1030
DNA (612bp) protein (204aa)
Guanylate kinase n=1 Tax=Geobacter sulfurreducens RepID=KGUA_GEOSL (db=UNIREF evalue=4.0e-115 bit_score=416.0 identity=100.0 coverage=99.0196078431373)
gmk; guanylate kinase rbh
gmk; guanylate kinase rbh
GUANYLATE_KINASE_2 (db=ProfileScan db_id=PS50052 from=5 to=183 evalue=0.0 interpro_id=IPR008144 interpro_description=Guanylate kinase)
ACD53_65_3
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1111..1320
DNA (210bp) protein (70aa)
DNA-directed RNA polymerase subunit omega n=1 Tax=Geobacter sulfurreducens RepID=RPOZ_GEOSL (db=UNIREF evalue=1.0e-31 bit_score=138.0 identity=100.0 coverage=97.1428571428571)
rpoZ; DNA-directed RNA polymerase subunit omega
RNA_pol_omega (db=superfamily db_id=SSF63562 from=1 to=62 evalue=6.7e-22 interpro_id=IPR006110 interpro_description=RNA polymerase Rpb6 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
RNA_pol_Rpb6 (db=HMMPfam db_id=PF01192 from=7 to=62 evalue=3.4e-14 interpro_id=IPR006110 interpro_description=RNA polymerase Rpb6 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
ACD53_65_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(1317..1805)
DNA (489bp) protein (163aa)
1317..1805 - (rbs_motif=AGGA/GGAG/GAGG rbs_spacer=11-12bp)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ACD53_65_5
RIFOXYC2_FULL_Syntrophobacterales_60_23_curated, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1977..2633)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Neisseria sicca ATCC 29256 RepID=C6M8S9_NEISI (db=UNIREF evalue=1.0e-11 bit_score=73.2 identity=31.35 coverage=83.5616438356164)
seg (db=Seg db_id=seg from=50 to=81)
seg (db=Seg db_id=seg from=201 to=215)
Uncharacterized protein Tax=RIFOXYC2_FULL_Syntrophobacterales_60_23_curated
ACD53_65_6
unknown

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comp(2606..2824)
DNA (219bp) protein (73aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
ACD53_65_7
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3358..3588
DNA (231bp) protein (77aa)
relA; GTP/GDP 3'-pyrophosphokinase and (p)ppGpp 3'-pyrophosphohydrolase
ACT (db=HMMPfam db_id=PF01842 from=3 to=65 evalue=3.7e-14 interpro_id=IPR002912 interpro_description=Amino acid-binding ACT GO=Biological Process: metabolic process (GO:0008152), Molecular Function: amino acid binding (GO:0016597))
ACT-like (db=superfamily db_id=SSF55021 from=1 to=72 evalue=3.5e-11)
GTP/GDP 3'-pyrophosphokinase and (P)ppGpp 3'-pyrophosphohydrolase {ECO:0000313|EMBL:AAR35612.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae
ACD53_65_8
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4145..4336)
DNA (192bp) protein (64aa)
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 n=1 Tax=Geobacter sulfurreducens RepID=RL28_GEOSL (db=UNIREF evalue=2.0e-28 bit_score=128.0 identity=100.0 coverage=96.875)
L28 (db=HMMTigr db_id=TIGR00009 from=1 to=56 evalue=1.50000306971104e-25 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=56 evalue=1.5e-19 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD53_65_9
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4428..5027
DNA (600bp) protein (200aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Geobacter sulfurreducens RepID=Q74AW6_GEOSL (db=UNIREF evalue=1.0e-84 bit_score=315.0 identity=100.0 coverage=99.0)
DUF218 (db=HMMPfam db_id=PF02698 from=40 to=180 evalue=8.00000000000001e-22 interpro_id=IPR003848 interpro_description=Protein of unknown function DUF218)
ACD53_65_10
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5032..6345)
DNA (1314bp) protein (438aa)
Methionyl-tRNA synthetase n=1 Tax=Geobacter sulfurreducens RepID=Q74AW7_GEOSL (db=UNIREF evalue=0.0 bit_score=914.0 identity=99.77 coverage=99.5433789954338)
metG; methionyl-tRNA synthetase rbh
metG; methionyl-tRNA synthetase rbh
metG: methionyl-tRNA synthetase (db=HMMTigr db_id=TIGR00398 from=1 to=432 evalue=6.3e-146 interpro_id=IPR002304 interpro_description=Methionyl-tRNA synthetase, class Ia GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: methionine-tRNA ligase activity (GO:0004825), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: methionyl-tRNA aminoacylation (GO:0006431))
ACD53_65_11
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6616..7653)
DNA (1038bp) protein (346aa)
PSP1 superfamily protein rbh
PSP1 superfamily protein rbh
Putative uncharacterized protein n=1 Tax=Geobacter sulfurreducens RepID=Q74AW8_GEOSL (db=UNIREF evalue=2.0e-168 bit_score=595.0 identity=100.0 coverage=83.5260115606936)
PSP1_C (db=ProfileScan db_id=PS51411 from=61 to=146 evalue=0.0 interpro_id=IPR007557 interpro_description=PSP1, C-terminal)
ACD53_65_12
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7714..7836)
DNA (123bp) protein (41aa)
holB; DNA polymerase III subunit delta'
DNA polymerase III, delta-prime subunit n=2 Tax=Geobacter sulfurreducens RepID=D7ALD4_GEOSK
DNA polymerase III, delta-prime subunit {ECO:0000313|EMBL:AAR35606.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geo
Displaying 12 items

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