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ACD53_101

Alias: ACD53_3158.11747.27

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD53_101_1
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..378
DNA (378bp) protein (126aa)
cobA; cob(I)yrinate a,c-diamide adenosyltransferase
CobA_CobO_BtuR (db=HMMPfam db_id=PF02572 from=7 to=124 evalue=8.8e-36 interpro_id=IPR003724 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity (GO:0008817), Biological Process: cobalamin biosynthetic process (GO:0009236))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=16 to=125 evalue=1.7e-35)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=19 to=125 evalue=1.6e-29)
ACD53_101_2
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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390..794
DNA (405bp) protein (135aa)
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit
B12_BINDING (db=ProfileScan db_id=PS51332 from=5 to=133 evalue=0.0 interpro_id=IPR006158 interpro_description=Cobalamin (vitamin B12)-binding GO=Molecular Function: cobalamin binding (GO:0031419), Molecular Function: metal ion binding (GO:0046872))
PTHR23408 (db=HMMPanther db_id=PTHR23408 from=1 to=131 evalue=4.39999001237694e-64)
Cbl-bd (db=superfamily db_id=SSF52242 from=3 to=130 evalue=7.7e-52 interpro_id=IPR006158 interpro_description=Cobalamin (vitamin B12)-binding GO=Molecular Function: cobalamin binding (GO:0031419), Molecular Function: metal ion binding (GO:0046872))
ACD53_101_3
unknown

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761..859
DNA (99bp) protein (33aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD53_101_4
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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881..1840
DNA (960bp) protein (320aa)
protein kinase, ArgK family rbh
protein kinase, ArgK family rbh
LAO/AO transport system ATPase n=1 Tax=Geobacter sulfurreducens RepID=Q74CU2_GEOSL (db=UNIREF evalue=1.0e-169 bit_score=598.0 identity=100.0 coverage=99.375)
lao (db=HMMTigr db_id=TIGR00750 from=10 to=310 evalue=2.99998750445706e-116 interpro_id=IPR005129 interpro_description=ArgK protein)
ACD53_101_5
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1919..2785
DNA (867bp) protein (289aa)
peptidoglycan L,D-transpeptidase rbh
peptidoglycan L,D-transpeptidase rbh
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Geobacter sulfurreducens RepID=Q74CU1_GEOSL (db=UNIREF evalue=2.0e-158 bit_score=561.0 identity=100.0 coverage=99.3079584775086)
seg (db=Seg db_id=seg from=5 to=19)
ACD53_101_6
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2840..4456
DNA (1617bp) protein (539aa)
PolyA polymerase family protein n=1 Tax=Geobacter sulfurreducens RepID=Q74CU0_GEOSL (db=UNIREF evalue=0.0 bit_score=933.0 identity=99.79 coverage=87.9406307977737)
ccaA; adenosine-specific tRNA nucleotidyltransferase
ccaA; adenosine-specific tRNA nucleotidyltransferase
seg (db=Seg db_id=seg from=476 to=490)
ACD53_101_7
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4396..5526
DNA (1131bp) protein (377aa)
ccaA; adenosine-specific tRNA nucleotidyltransferase
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=1 to=323 evalue=5.3e-71)
TRNA NUCLEOTIDYL TRANSFERASE-RELATED (db=HMMPanther db_id=PTHR13734:SF8 from=1 to=323 evalue=5.3e-71)
Poly A polymerase C-terminal region-like (db=superfamily db_id=SSF81891 from=103 to=365 evalue=1.0e-43)
ACD53_101_8
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5563..6924)
DNA (1362bp) protein (454aa)
Adenosylmethionine--8-amino-7-oxononanoate aminotransferase n=1 Tax=Geobacter sulfurreducens RepID=Q74CT9_GEOSL (db=UNIREF evalue=0.0 bit_score=931.0 identity=100.0 coverage=99.5594713656388)
bioA; lysine--8-amino-7-oxononanoate aminotransferase rbh
bioA; lysine--8-amino-7-oxononanoate aminotransferase rbh
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=255 to=292 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACD53_101_9
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6917..7387)
DNA (471bp) protein (157aa)
bioD; dethiobiotin synthetase
seg (db=Seg db_id=seg from=45 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=142 evalue=4.4e-31)
ACD53_101_10
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7675..8664)
DNA (990bp) protein (330aa)
bioB; biotin synthase rbh
bioB; biotin synthase rbh
Biotin synthase n=1 Tax=Geobacter sulfurreducens RepID=BIOB_GEOSL (db=UNIREF evalue=0.0 bit_score=650.0 identity=100.0 coverage=99.3939393939394)
bioB (db=HMMTigr db_id=TIGR00433 from=18 to=322 evalue=7.0999832511256e-116 interpro_id=IPR002684 interpro_description=Biotin synthase GO=Molecular Function: biotin synthase activity (GO:0004076), Biological Process: biotin biosynthetic process (GO:0009102))
ACD53_101_11
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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8896..9375
DNA (480bp) protein (160aa)
Ribosome maturation factor rimP n=1 Tax=Geobacter sulfurreducens RepID=RIMP_GEOSL (db=UNIREF evalue=7.0e-85 bit_score=315.0 identity=100.0 coverage=98.75)
hypothetical protein rbh
hypothetical protein rbh
DUF150 (db=HMMPfam db_id=PF02576 from=14 to=155 evalue=1.9e-40 interpro_id=IPR003728 interpro_description=Uncharacterised protein family UPF0090)
ACD53_101_12
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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9401..10558
DNA (1158bp) protein (386aa)
nusA; transcription elongation factor NusA rbh
nusA; transcription elongation factor NusA rbh
N utilization substance protein A n=1 Tax=Geobacter sulfurreducens RepID=Q74CT5_GEOSL (db=UNIREF evalue=0.0 bit_score=725.0 identity=100.0 coverage=92.2279792746114)
NusA (db=HMMTigr db_id=TIGR01953 from=6 to=344 evalue=0.0 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528))
ACD53_101_13
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10562..11179
DNA (618bp) protein (206aa)
Ribosomal protein L7Ae family protein n=1 Tax=Geobacter sulfurreducens RepID=Q74CT4_GEOSL (db=UNIREF evalue=5.0e-112 bit_score=406.0 identity=100.0 coverage=99.0291262135922)
ylxRQ; RNA-binding protein YlxRQ rbh
ylxRQ; RNA-binding protein YlxRQ rbh
DUF448 (db=superfamily db_id=SSF64376 from=3 to=96 evalue=5.2e-26 interpro_id=IPR007393 interpro_description=Protein of unknown function DUF448)
ACD53_101_14
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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11157..11792
DNA (636bp) protein (212aa)
infB; translation initiation factor IF-2
Translation initiation factor IF-2 n=1 Tax=Geobacter sulfurreducens RepID=IF2_GEOSL (db=UNIREF evalue=6.0e-26 bit_score=120.0 identity=100.0 coverage=27.3584905660377)
seg (db=Seg db_id=seg from=60 to=160)
IF2_N (db=HMMPfam db_id=PF04760 from=1 to=46 evalue=2.3e-15 interpro_id=IPR006847 interpro_description=Translation initiation factor IF-2, N-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Displaying 14 items

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