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ACD53_164

Alias: ACD53_41450.4833.18

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD53_164_1
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..186
DNA (186bp) protein (62aa)
nrfA; cytochrome c nitrite and sulfite reductase, catalytic subunit lipoprotein, 5 heme-binding sites
Cytochrom_C552 (db=HMMPfam db_id=PF02335 from=2 to=58 evalue=2.6e-05 interpro_id=IPR003321 interpro_description=Cytochrome c552 GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Biological Process: oxidation reduction (GO:0055114))
Cytochrome c-552 {ECO:0000256|SAAS:SAAS00233541}; EC=1.-.-.- {ECO:0000256|SAAS:SAAS00275652};; EC=1.7.2.2 {ECO:0000256|SAAS:SAAS00233490};; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteob
Cytochrome c nitrite and sulfite reductase, catalytic subunit lipoprotein, 5 heme-binding sites n=2 Tax=Geobacter sulfurreducens RepID=D7AEU5_GEOSK
Tiny, no heme-binding domain Jill Banfield (11/15/12)
Putative nitrite reductase- confirm active nrfA? kelly wrighton (11/15/12)
nitrite reductase low nitrate conditions kelly wrighton (11/15/12)
ACD53_164_2
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(276..725)
DNA (450bp) protein (150aa)
seg (db=Seg db_id=seg from=119 to=131)
Uncharacterized protein {ECO:0000313|EMBL:GAM09740.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1
ACD53_164_3
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1140..1313
DNA (174bp) protein (58aa)
yccM-2; iron-sulfur cluster-binding oxidoreductase
seg (db=Seg db_id=seg from=24 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Iron-sulfur cluster-binding oxidoreductase {ECO:0000313|EMBL:AAR36544.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="
ACD53_164_4
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1391..1846
DNA (456bp) protein (152aa)
PAS domain-containing protein rbh
PAS domain-containing protein rbh
Sensory box protein n=1 Tax=Geobacter sulfurreducens RepID=Q747W3_GEOSL (db=UNIREF evalue=1.0e-81 bit_score=304.0 identity=100.0 coverage=98.6842105263158)
PAC (db=ProfileScan db_id=PS50113 from=83 to=135 evalue=0.0 interpro_id=IPR000700 interpro_description=PAS-associated, C-terminal GO=Molecular Function: two-component sensor activity (GO:0000155), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160))
ACD53_164_5
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2028..2339)
DNA (312bp) protein (104aa)
2028..2339 - (rbs_motif=GGxGG rbs_spacer=5-10bp)
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
ACD53_164_6
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2438..2686
DNA (249bp) protein (83aa)
hypothetical protein
seg (db=Seg db_id=seg from=51 to=66)
Uncharacterized protein {ECO:0000313|EMBL:AAR36542.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurred
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AEU2_GEOSK
ACD53_164_7
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2727..3254
DNA (528bp) protein (176aa)
HPP family protein rbh
HPP family protein n=1 Tax=Geobacter sulfurreducens RepID=Q747W5_GEOSL (db=UNIREF evalue=7.0e-70 bit_score=265.0 identity=100.0 coverage=92.6136363636364)
transmembrane_regions (db=TMHMM db_id=tmhmm from=138 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=118)
ACD53_164_8
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3376..4872
DNA (1497bp) protein (499aa)
sensor histidine kinase, GAF domain-containing rbh
sensor histidine kinase, GAF domain-containing rbh
Sensor protein n=1 Tax=Geobacter sulfurreducens RepID=Q747W7_GEOSL (db=UNIREF evalue=0.0 bit_score=941.0 identity=100.0 coverage=99.7995991983968)
seg (db=Seg db_id=seg from=217 to=236)
Displaying 8 items

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