ggKbase home page

ACD53_360

Alias: ACD53_76092.4481.16

Search features with annotation key words

Displaying 4 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD53_360_1
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..254)
DNA (252bp) protein (84aa)
UroD-like decarboxylase/methyltransferase
URO-D (db=HMMPfam db_id=PF01208 from=3 to=82 evalue=1.0e-11 interpro_id=IPR000257 interpro_description=Uroporphyrinogen decarboxylase (URO-D) GO=Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853), Biological Process: porphyrin biosynthetic process (GO:0006779))
UROD/MetE-like (db=superfamily db_id=SSF51726 from=1 to=82 evalue=1.5e-09)
UroD-like decarboxylase/methyltransferase, putative n=2 Tax=Geobacter sulfurreducens RepID=D7AMK3_GEOSK
may be cobalamin biosyn or utilizing? Jill Banfield (11/15/12)
ACD53_360_2
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(251..646)
DNA (396bp) protein (132aa)
corrinoid-binding domain-containing protein
no description (db=Gene3D db_id=G3DSA:3.40.50.280 from=1 to=130 evalue=5.5e-31 interpro_id=IPR006158 interpro_description=Cobalamin (vitamin B12)-binding GO=Molecular Function: cobalamin binding (GO:0031419), Molecular Function: metal ion binding (GO:0046872))
Cobalamin (vitamin B12)-binding domain (db=superfamily db_id=SSF52242 from=1 to=129 evalue=5.7e-28 interpro_id=IPR006158 interpro_description=Cobalamin (vitamin B12)-binding GO=Molecular Function: cobalamin binding (GO:0031419), Molecular Function: metal ion binding (GO:0046872))
B12-binding (db=HMMPfam db_id=PF02310 from=2 to=111 evalue=1.2e-18 interpro_id=IPR006158 interpro_description=Cobalamin (vitamin B12)-binding GO=Molecular Function: cobalamin binding (GO:0031419), Molecular Function: metal ion binding (GO:0046872))
ACD53_360_3
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(967..3234)
DNA (2268bp) protein (756aa)
sensor histidine kinase, HAMP and PAS domain-containing rbh
sensor histidine kinase, HAMP and PAS domain-containing rbh
Sensor protein n=1 Tax=Geobacter sulfurreducens RepID=Q74AG7_GEOSL (db=UNIREF evalue=0.0 bit_score=1411.0 identity=99.86 coverage=96.8253968253968)
seg (db=Seg db_id=seg from=10 to=16)
ACD53_360_4
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3231..4379)
DNA (1149bp) protein (383aa)
ABC transporter, periplasmic substrate-binding protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74AG6_GEOSL (db=UNIREF evalue=0.0 bit_score=775.0 identity=100.0 coverage=99.4778067885117)
ABC transporter substrate-binding lipoprotein rbh
ABC transporter substrate-binding lipoprotein rbh
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=31 evalue=0.0)
Displaying 4 items

View Taxonomy