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ACD58_13

Alias: ACD58_77457.17680.10

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD58_13_1

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195..908
DNA (714bp) protein (238aa)
cytochrome c biogenesis transmembrane protein
seg (db=Seg db_id=seg from=31 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=138 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
ACD58_13_2

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1489..2172
DNA (684bp) protein (228aa)
pyruvate kinase (EC:2.7.1.40)
seg (db=Seg db_id=seg from=90 to=112)
no description (db=Gene3D db_id=G3DSA:3.20.20.60 from=1 to=220 evalue=7.2e-69 interpro_id=IPR015813 interpro_description=Pyruvate/Phosphoenolpyruvate kinase, catalytic core GO=Molecular Function: catalytic activity (GO:0003824))
Phosphoenolpyruvate/pyruvate domain (db=superfamily db_id=SSF51621 from=2 to=222 evalue=2.6e-67 interpro_id=IPR015813 interpro_description=Pyruvate/Phosphoenolpyruvate kinase, catalytic core GO=Molecular Function: catalytic activity (GO:0003824))
ACD58_13_3

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comp(2336..4879)
DNA (2544bp) protein (848aa)
cation transport ATPase
cation transport ATPase
Cation transport ATPase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYF6_SYNAS (db=UNIREF evalue=0.0 bit_score=775.0 identity=48.38 coverage=97.0518867924528)
transmembrane_regions (db=TMHMM db_id=tmhmm from=226 to=248)
ACD58_13_4

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4983..5417
DNA (435bp) protein (145aa)
NUDIX hydrolase
NUDIX_BOX (db=PatternScan db_id=PS00893 from=43 to=64 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=1 to=141 evalue=2.8e-25 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=8 to=122 evalue=2.5e-18 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD58_13_5

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5417..6043
DNA (627bp) protein (209aa)
seg (db=Seg db_id=seg from=191 to=204)
seg (db=Seg db_id=seg from=171 to=185)
DUF1045 (db=HMMPfam db_id=PF06299 from=89 to=200 evalue=2.8e-07 interpro_id=IPR009389 interpro_description=Protein of unknown function DUF1045)
LigT-like (db=superfamily db_id=SSF55144 from=1 to=205 evalue=5.9e-07 interpro_id=IPR009097 interpro_description=RNA ligase/cyclic nucleotide phosphodiesterase GO=Molecular Function: catalytic activity (GO:0003824), Cellular Component: intracellular (GO:0005622), Biological Process: RNA metabolic process (GO:0016070))
ACD58_13_6

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6040..6519
DNA (480bp) protein (160aa)
NUDIX hydrolase
seg (db=Seg db_id=seg from=25 to=28)
Nudix (db=superfamily db_id=SSF55811 from=15 to=149 evalue=1.3e-29 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=15 to=134 evalue=2.0e-22 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD58_13_7

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6534..6992
DNA (459bp) protein (153aa)
seg (db=Seg db_id=seg from=131 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=66)
Uncharacterized protein {ECO:0000313|EMBL:EKD56069.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_13_8

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7209..7481
DNA (273bp) protein (91aa)
integrase catalytic subunit
hypothetical protein alias= id=86375 tax=ACD58 species=Methylobacterium extorquens genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=ACD58 organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56070.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_13_9

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7520..8128
DNA (609bp) protein (203aa)
seg (db=Seg db_id=seg from=21 to=32)
DUF1045 (db=HMMPfam db_id=PF06299 from=72 to=191 evalue=3.3e-07 interpro_id=IPR009389 interpro_description=Protein of unknown function DUF1045)
Uncharacterized protein {ECO:0000313|EMBL:EKD56071.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_13_10

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8130..8972
DNA (843bp) protein (281aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=204 to=226)
transmembrane_regions (db=TMHMM db_id=tmhmm from=260 to=279)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=162)
seg (db=Seg db_id=seg from=264 to=277)
ACD58_13_11

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8993..9337
DNA (345bp) protein (115aa)
seg (db=Seg db_id=seg from=17 to=28)
Nudix (db=superfamily db_id=SSF55811 from=15 to=77 evalue=1.5e-19 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=15 to=77 evalue=8.2e-18 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=16 to=77 evalue=4.0e-14 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD58_13_12

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9426..9977
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVL3_9BACT (db=UNIREF evalue=8.0e-40 bit_score=166.0 identity=52.6 coverage=81.5217391304348)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD56052.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_13_13

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10254..10799
DNA (546bp) protein (182aa)
DNA mismatch repair protein MutT
NUDIX_BOX (db=PatternScan db_id=PS00893 from=78 to=99 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=2 to=180 evalue=1.1e-33 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=6 to=181 evalue=1.6e-30 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD58_13_14

Not on your lists

10854..11825
DNA (972bp) protein (324aa)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=18 to=323 evalue=3.1e-27)
ACD58_13_15

Not on your lists

11846..12388
DNA (543bp) protein (181aa)
seg (db=Seg db_id=seg from=57 to=68)
Uncharacterized protein {ECO:0000313|EMBL:EKD56055.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_13_16

Not on your lists

12584..12916
DNA (333bp) protein (111aa)
csaA; export chaperone protein CsaA
chap_CsaA: export-related chaperone CsaA (db=HMMTigr db_id=TIGR02222 from=4 to=110 evalue=8.1e-56 interpro_id=IPR008231 interpro_description=Secretion chaperone CsaA)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=110 evalue=4.1e-30 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=110 evalue=1.4e-28 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD58_13_17

Not on your lists

13050..13433
DNA (384bp) protein (128aa)
13050..13433 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD56057.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD58_13_18

Not on your lists

13689..13919
DNA (231bp) protein (77aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
Uncharacterized protein {ECO:0000313|EMBL:EKD56058.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD58_13_19

Not on your lists

14051..14809
DNA (759bp) protein (253aa)
iclR helix-turn-helix domain protein
Transcriptional regulator, TrmB n=1 Tax=Burkholderia sp. Ch1-1 RepID=D5NS62_9BURK (db=UNIREF evalue=1.0e-22 bit_score=110.0 identity=28.38 coverage=87.3517786561265)
TrmB (db=HMMPfam db_id=PF01978 from=8 to=68 evalue=7.7e-10 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=102 evalue=1.3e-07)
ACD58_13_20

Not on your lists

14937..16019
DNA (1083bp) protein (361aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-ALANINE--D-ALANINE LIGASE (db=HMMPanther db_id=PTHR23132 from=76 to=344 evalue=6.2e-43)
Dala_Dala_lig_C (db=HMMPfam db_id=PF07478 from=139 to=339 evalue=1.6e-39 interpro_id=IPR011095 interpro_description=D-alanine--D-alanine ligase, C-terminal GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=127 to=339 evalue=1.8e-32)
ACD58_13_21

Not on your lists

16028..17110
DNA (1083bp) protein (361aa)
D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS09_SYNAS (db=UNIREF evalue=3.0e-92 bit_score=342.0 identity=49.43 coverage=96.1218836565097)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-ALANINE--D-ALANINE LIGASE (db=HMMPanther db_id=PTHR23132 from=84 to=352 evalue=4.0e-48)
ACD58_13_22

Not on your lists

comp(17246..17716)
DNA (471bp) protein (157aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=130 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
Displaying 22 items

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